The dry forests of northern Peru are home to extensive populations of algarrobo (Neltuma spp.). Its fruit serves as feed for goats and is used in various agro-industrial products. However, the nutritional quality can be influenced by the physicochemical properties of the soil and vegetation coverage. The objective of this study was to understand and predict the concentration of protein and ether extracts of carob and evaluate its relationship with soil properties and vegetation indices. Principal component analysis (PCA) and correlation analyses were conducted. The prediction of protein and ether extract was carried out using the Eureqa-Formulize software 1.24.0. In the PCA, protein showed a positive relationship with ash and ether extract but a negative relationship with moisture. Likewise, moderate correlations were observed between protein and ash content (0.51). Protein also showed p...

20 páginas

Universidad Nacional Agraria La Molina. Facultad de Ingeniería Agrícola. Departamento Académico de Recursos Hídricos

Leaf area is related to tree growth, water balance, and mechanical resistance to physical and biotic agents. Given its importance, the purpose of the study was to compare two nondestructive methods of leaf area estimation using the free software ImageJ vs. graph paper in seedlings of quina tree. Three young and mature leaves were evaluated on 18 quina seedlings. Descriptive statistics were obtained, and both methods were compared using the Kruskal–Wallis test, and a regression equation was estimated based on leaf width and length.

Tomato (Solanum lycopersicum) (Solanaceae) is an important vegetable crop worldwide that contains significant amounts of vitamins A and C. It also possesses a powerful antioxidant, lycopene, which can help prevent the development of many forms of cancer. However, this vegetable is highly susceptible to a number of emerging viruses. Since the first report of ToBRFV in Jordan, this emerging virus has been detected in Germany, Israel, Italy, Mexico, Palestine, and the United States, but its incidence was not reported in Peru. We collected 56 samples of fresh leaves of tomato plants with viral symptoms and 13 without symptoms as control from two regions that comprise more than 50% of tomato production in Peru, Lima and Ica. Mosaic, mottling, plant stunting and brown rugose symptoms were observed in collected leaves that were preserved in liquid nitrogen until processing. We extracted RNA usi...

Water scarcity and the planning of socioeconomic activities are challenges in the management of water resources. Therefore, the objective of this study was to use reliability indicators (RI) to simulate management scenarios in the Lurin River Basin. First, flow rates for the period 1969–2019 were calculated using the EvalHid HBV hydrological model and SIMGES, both from the AQUATOOL decision support system, to simulate demands. The estimation of agricultural demand IRs was made under three conditions: that the deficits for one, two, and 10 years should not exceed 20–40, 40–60, and 80–100% of the annual demand. The goodness-of-fit indices obtained for flow calibration were 0.716, 0.89, and 0.901 for Nash index (NSE), Nash natural logarithm (Ln NSE), and Pearson's correlation coefficient (R), representing the values of satisfactory, very good, and good, respectively. Agricultural de...

Avocado crop (Persea americana Mill.) is of great commercial importance due to its high profitability. However, it is being affected by various diseases and pests that affect yield and reduce fruit quality. The aim of this research was to develop methodologies for the evaluation of avocado plantations using different non-destructive technologies for rapid phenotyping and early detection of the incidence of diseases or damage due to stress in the stem. A plot of 0.7 ha. was evaluated, with a total of 44 individuals using Field-Map technology (dasometric and morphological characterization), RGB-multispectral images from Remotely Piloted Aircraft System (RPAS) (rapid phenotyping), while 15 individuals were evaluated using tomography (assessment of the internal state of the stem). The results with tomography indicated that there is a tree with wood rot of 14% with a lower acoustic speed with...

Dry forests are ecosystems of great importance worldwide, but in recent decades they have been affected by climate change and changes in land use. In this study, we evaluated land use and land cover changes (LULC) in dry forests in Peru between 2017 and 2021 using Sentinel-2 images, and cloud processing with Machine Learning (ML) models. The results reported a mapping with accuracies above 85% with an increase in bare soil, urban areas and open dry forest, and reduction in the area of crops and dense dry forest. Protected natural areas lost 2.47% of their conserved surface area and the areas with the greatest degree of land use impact are located in the center and north of the study area. The study provides information that can help in the management of dry forests in northern Peru.

Dry forests are home to large amounts of biodiversity, are providers of ecosystem services, and control the advance of deserts. However, globally, these ecosystems are being threatened by various factors such as climate change, deforestation, and land use and land cover (LULC). The objective of this study was to identify the dynamics of LULC changes and the factors associated with the transformations of the dry forest in the Tumbes region (Peru) using Google Earth Engine (GEE). For this, the annual collection of Sentinel 2 (S2) satellite images of 2017 and 2021 was analyzed. Six types of LULC were identified, namely urban area (AU), agricultural land (AL), land without or with little vegetation (LW), water body (WB), dense dry forest (DDF), and open dry forest (ODF). Subsequently, we applied the Random Forest (RF) method for the classification. LULC maps reported accuracies greater than ...

The dry forests of northern Peru, in the regions of Piura, Tumbes, Lambayeque, and La Libertad, have experienced significant changes as a result of deforestation and changes in land use, leading to the loss of biodiversity and resources. This work analyzed for the first time the changes in vegetation cover and land use of the Pómac Forest Historical Sanctuary (PFHS), located in the department of Lambayeque (northern Peru). The employed approach was the random forest algorithm and visually interpreted Landsat satellite images for the periods 2000–2002, 2002–2004, and 2004–2008. Gain and loss rates were computed for each period, and the recovery process was assessed using the normalized difference vegetation index (NDVI) and enhanced vegetation index (EVI). Results indicate an expansion of agricultural land during each period, resulting in the deforestation of 102.6 hectares of dens...

Lupinus mutabilis Sweet (Fabaceae), “tarwi” or “chocho”, is an important grain legume in the Andean region. In Peru, studies on tarwi have mainly focused on morphological features; however, they have not been molecularly characterized. Currently, it is possible to explore the genetic parameters of plants with reliable and modern methods such as genotyping by sequencing (GBS). Here, for the first time, we used single nucleotide polymorphism (SNP) markers to infer the genetic diversity and population structure of 89 accessions of tarwi from nine Andean regions of Peru. A total of 5922 SNPs distributed along all chromosomes of tarwi were identified. STRUCTURE analysis revealed that this crop is grouped into two clusters. A dendrogram was generated using the UPGMA clustering algorithm and, like the principal coordinate analysis (PCoA), it showed two groups that correspond to the geog...

The Peruvian creole cattle (PCC) is a neglected breed and an essential livestock resource in the Andean region of Peru. To develop a modern breeding program and conservation strategies for the PCC, a better understanding of the genetics of this breed is needed. We sequenced the whole genome of the PCC using a de novo assembly approach with a paired-end 150 strategy on the Illumina HiSeq 2500 platform, obtaining 320 GB of sequencing data. A reference scaffolding was used to improve the draft genome. The obtained genome size of the PCC was 2.81 Gb with a contig N50 of 108 Mb and 92.59% complete BUSCOs. This genome size is similar to the genome references of Bos taurus and B. indicus. In addition, we identified 40.22% of repetitive DNA of the genome assembly, of which retroelements occupy 32.39% of the total genome. A total of 19,803 protein-coding genes were annotated in the PCC genome. Fo...

Lupinus mutabilis Sweet (Fabaceae), “tarwi” or “chocho”, is an important grain legume in the Andean region. In Peru, studies on tarwi have mainly focused on morphological features; however, they have not been molecularly characterized. Currently, it is possible to explore the genetic parameters of plants with reliable and modern methods such as genotyping by sequencing (GBS). Here, for the first time, we used single nucleotide polymorphism (SNP) markers to infer the genetic diversity and population structure of 89 accessions of tarwi from nine Andean regions of Peru. A total of 5922 SNPs distributed along all chromosomes of tarwi were identified. STRUCTURE analysis revealed that this crop is grouped into two clusters. A dendrogram was generated using the UPGMA clustering algorithm and, like the principal coordinate analysis (PCoA), it showed two groups that correspond to the geog...

Early assessment of crop development is a key aspect of precision agriculture. Shortening the time of response before a deficit of irrigation, nutrients and damage by diseases is one of the usual concerns in agriculture. Early prediction of crop yields can increase profitability in the farmer's economy. In this study we aimed to predict the yield of four maize commercial hybrids (Dekalb7508, Advanta9313, MH_INIA619 and Exp_05PMLM) using remotely sensed spectral vegetation indices (VI). A total of 10 VI (NDVI, GNDVI, GCI, RVI, NDRE, CIRE, CVI, MCARI, SAVI, and CCCI) were considered for evaluating crop yield and plant cover at 31, 39, 42, 46 and 51 days after sowing (DAS). A multivariate analysis was applied using principal component analysis (PCA), linear regression, and r-Pearson correlation. In the present study, highly significant correlations were found between plant cover with VIs at...

The Peruvian creole cattle (PCC) is a neglected breed, and is an essential livestock resource in the Andean region of Peru. To develop a modern breeding program and conservation strategies for the PCC, a better understanding of the genetics of this breed is needed. We sequenced the whole genome of the PCC using a paired-end 150 strategy on the Illumina HiSeq 2500 platform, obtaining 320 GB of sequencing data. The obtained genome size of the PCC was 2.77 Gb with a contig N50 of 108Mb and 92.59% complete BUSCOs. Also, we identified 40.22% of repetitive DNA of the genome assembly, of which retroelements occupy 32.39% of the total genome. A total of 19,803 protein-coding genes were annotated in the PCC genome. We downloaded proteomes and genomes of the Bovinae subfamily, and conducted a comparative analysis with our draft genome. Phylogenomic analysis showed that PCC is related to Bos indicu...

Early assessment of crop development is a key aspect of precision agriculture. Shortening the time of response before a deficit of irrigation, nutrients and damage by diseases is one of the usual concerns in agriculture. Early prediction of crop yields can increase profitability for the farmer’s economy. In this study, we aimed to predict the yield of four maize commercial hybrids (Dekalb7508, Advanta9313, MH_INIA619 and Exp_05PMLM) using vegetation indices (VIs). A total of 10 VIs (NDVI, GNDVI, GCI, RVI, NDRE, CIRE, CVI, MCARI, SAVI, and CCCI) were considered for evaluating crop yield and plant cover at 31, 39, 42, 46 and 51 days after sowing (DAS). A multivariate analysis was applied using principal component analysis (PCA), linear regression, and r-Pearson correlation. Highly significant correlations were found between plant cover with VIs at 46 (GNDVI, GCI, RVI, NDRE, CIRE and CCCI...

New-generation sequencing technologies, among them SNP chips for massive genotyping, are useful for the effective management of genetic resources. To date, molecular studies in Peruvian cattle are still scarce. For the first time, the genetic diversity and population structure of a reproductive nucleus cattle herd of four commercial breeds from a Peruvian institution were determined. This nucleus comprises Brahman (N = 9), Braunvieh (N = 9), Gyr (N = 5), and Simmental (N = 15) breeds. Additionally, samples from a locally adapted creole cattle, the Arequipa Fighting Bull (AFB, N = 9), were incorporated. Female individuals were genotyped with the GGPBovine100K and ma les with the BovineHD. Quality control, and the proportion of polymorphic SNPs, minor allele frequency, expected heterozygosity, observed heterozygosity, and inbreeding coefficient were estimated for the five breeds. Admixture...

The development of anthropic activities and climate change effects impact worldwide species' ecosystems and habitats. Habitats' adequate prediction can be an important tool to assess current and future trends. In addition, it allows strategies development for their conservation. The Neltuma pallida of the forest region in northern Peru, although very significant, has experienced a decline in recent years. The objective of this research is to evaluate the current and future distribution and conservation status of N. pallida in the Peruvian dry forest under climate change (Location: Republic of Peru). A total of 132 forest presence records and 10 variables (bioclimatic, topographic, and soil) were processed and selected to obtain the current and future distribution for 2100, using Google Earth Engine (GEE), RStudio, and MaxEnt. The area under the curve values fell within the range of 0.9...

The spatial heterogeneity of soil properties has a significant impact on crop growth, making it difficult to adopt site-specific crop management practices. Traditional laboratory-based analyses are costly, and data extrapolation for mapping soil properties using high-resolution imagery becomes a computationally expensive procedure, taking days or weeks to obtain accurate results using a desktop workstation. To overcome these challenges, cloud-based solutions such as Google Earth Engine (GEE) have been used to analyze complex data with machine learning algorithms. In this study, we explored the feasibility of designing and implementing a digital soil mapping approach in the GEE platform using high-resolution reflectance imagery derived from a thermal infrared and multispectral camera Altum (MicaSense, Seattle, WA, USA). We compared a suite of multispectral-derived soil and vegetation indi...

Goat farming constitutes a significant source of income for farmers in northern Peru. There is currently an absence of information about the genetics of Peruvian Creole goats that would enable us to understand their origins and genetic spread. The objective of this study was to estimate the genetic diversity of Creole goats from northern Peru using SNP markers. This study involved the collection of 192 male Creole goats from three key goat production geographical departments in northern Peru. These goat samples were genotyped using the GGPGoat70k SNP panel. To explore the genetic influence of other breeds on Peruvian Creole goats, our dataset was combined with previously published SNP genotypes. External data set includes multiple breeds genotypes sampled from Argentina, Brazil, Spain, and Alpine breed from Italy, France, and Switzerland. After quality control 52,832 autosomal SNPs were ...