In this study, the quality of sediment and surface water in two natural wetlands, Paca and Tragadero, in the central region of Peru was evaluated using pollution indices, including the geoaccumulation index, pollutant load index, modified pollution degree, potential ecological risk index, and site rank index, for four heavy metals. Principal component analysis was used to identify potential metal contaminant sources. The determination of Fe, Zn, Pb, and As was performed by flame atomic absorption spectrophotometry. The average concentrations of metals in the sediments of both lagoons decreased in the order Fe > Zn > Pb > As. The analysis of the contamination indices determined that As and Pb are the elements that contribute the most to environmental degradation in both wetlands. There is a strong correlation between the values of potential ecological risk and the modified degree of conta...