Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon

Descripción del Articulo

There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade...

Descripción completa

Detalles Bibliográficos
Autores: García Dávila, Carmen, Aldana Gomero, David, Renno, Jean-François, Díaz Soria, Rossana, Hidalgo Pizango, Gabriel, Flores Llampazo, Gerardo, Castro Ruiz, Diana, Mejía de Loayza, Eduardo, Angulo Chávez, Carlos, Mader, Malte, Tysklind, Niklas, Paredes Villanueva, Kathelyn, Del Castillo Torres, Dennis, Degen, Bernd, Honorio Coronado, Eurídice
Formato: artículo
Fecha de Publicación:2019
Institución:Instituto de investigaciones de la Amazonía Peruana
Repositorio:IIAP-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.iiap.gob.pe:20.500.12921/418
Enlace del recurso:https://hdl.handle.net/20.500.12921/418
https://doi.org/10.1007/s10709-019-00082-2
Nivel de acceso:acceso abierto
Materia:Dipteryx charapilla
Dipteryx micrantha
Variación genética
Distancia genética
Microsatélites
Secuencia de ADN
Dipteryx
Genotipos
Loreto
Ucayali
Madre de Dios
Amazonía
id IIAP_e4785d945d5b425545e9ff3ac5f0ce91
oai_identifier_str oai:repositorio.iiap.gob.pe:20.500.12921/418
network_acronym_str IIAP
network_name_str IIAP-Institucional
repository_id_str 4821
spelling García Dávila, CarmenAldana Gomero, DavidRenno, Jean-FrançoisDíaz Soria, RossanaHidalgo Pizango, GabrielFlores Llampazo, GerardoCastro Ruiz, DianaMejía de Loayza, EduardoAngulo Chávez, CarlosMader, MalteTysklind, NiklasParedes Villanueva, KathelynDel Castillo Torres, DennisDegen, BerndHonorio Coronado, Eurídice2019-12-23T14:50:53Z2019-12-23T14:50:53Z2019-12Genetica (2019): 1-121573-6857https://hdl.handle.net/20.500.12921/418https://doi.org/10.1007/s10709-019-00082-2Geneticahttps://doi.org/10.1007/s10709-019-00082-2There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.Programa Nacional de Innovación para la Competitividad y Productividad Innóvate-Perú (contrato 381-PNICP-PIAP-2014); German Federal Ministry of Food and Agriculture (BMEL, Large Scale Project, Grant 28I-001-01)Revisión por pares.application/pdfengSpringer Natureinfo:eu-repo/semantics/articlehttps://link.springer.com/article/10.1007%2Fs10709-019-00082-2info:eu-repo/semantics/openAccessAll Rights Reserved Springer Nature Switzerland AG 2019Instituto de Investigaciones de la Amazonía PeruanaRepositorio Institucional - IIAPreponame:IIAP-Institucionalinstname:Instituto de investigaciones de la Amazonía Peruanainstacron:IIAPDipteryx charapillaDipteryx micranthaVariación genéticaDistancia genéticaMicrosatélitesSecuencia de ADNDipteryxGenotiposLoretoUcayaliMadre de DiosAmazoníaMolecular evidence for three genetic species of Dipteryx in the Peruvian Amazoninfo:eu-repo/semantics/articleORIGINALGarcia_articulo_2019.pdfGarcia_articulo_2019.pdfTexto Completoapplication/pdf1888648https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/1/Garcia_articulo_2019.pdf0e393638d71ee0893fee9839b48bf021MD51licence.txtlicence.txttext/plain; charset=utf-8564https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/2/licence.txtd01e77160199194c1e849481498182e2MD52TEXTGarcia_articulo_2019.pdf.txtGarcia_articulo_2019.pdf.txtExtracted texttext/plain46137https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/9/Garcia_articulo_2019.pdf.txt098175a23871b119e65ba152ff2f9e70MD59THUMBNAILGarcia_articulo_2019.pdf.jpgGarcia_articulo_2019.pdf.jpgGenerated Thumbnailimage/jpeg8351https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/10/Garcia_articulo_2019.pdf.jpg7196bb836cbf82dcc240868fece1c46aMD51020.500.12921/418oai:repositorio.iiap.gob.pe:20.500.12921/4182022-12-29 19:06:12.093Repositorio Institucional del IIAPrepositorioIIAP-help@iiap.gob.pe
dc.title.es_ES.fl_str_mv Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
title Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
spellingShingle Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
García Dávila, Carmen
Dipteryx charapilla
Dipteryx micrantha
Variación genética
Distancia genética
Microsatélites
Secuencia de ADN
Dipteryx
Genotipos
Loreto
Ucayali
Madre de Dios
Amazonía
title_short Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
title_full Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
title_fullStr Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
title_full_unstemmed Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
title_sort Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
author García Dávila, Carmen
author_facet García Dávila, Carmen
Aldana Gomero, David
Renno, Jean-François
Díaz Soria, Rossana
Hidalgo Pizango, Gabriel
Flores Llampazo, Gerardo
Castro Ruiz, Diana
Mejía de Loayza, Eduardo
Angulo Chávez, Carlos
Mader, Malte
Tysklind, Niklas
Paredes Villanueva, Kathelyn
Del Castillo Torres, Dennis
Degen, Bernd
Honorio Coronado, Eurídice
author_role author
author2 Aldana Gomero, David
Renno, Jean-François
Díaz Soria, Rossana
Hidalgo Pizango, Gabriel
Flores Llampazo, Gerardo
Castro Ruiz, Diana
Mejía de Loayza, Eduardo
Angulo Chávez, Carlos
Mader, Malte
Tysklind, Niklas
Paredes Villanueva, Kathelyn
Del Castillo Torres, Dennis
Degen, Bernd
Honorio Coronado, Eurídice
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv García Dávila, Carmen
Aldana Gomero, David
Renno, Jean-François
Díaz Soria, Rossana
Hidalgo Pizango, Gabriel
Flores Llampazo, Gerardo
Castro Ruiz, Diana
Mejía de Loayza, Eduardo
Angulo Chávez, Carlos
Mader, Malte
Tysklind, Niklas
Paredes Villanueva, Kathelyn
Del Castillo Torres, Dennis
Degen, Bernd
Honorio Coronado, Eurídice
dc.subject.es_ES.fl_str_mv Dipteryx charapilla
Dipteryx micrantha
Variación genética
Distancia genética
Microsatélites
Secuencia de ADN
Dipteryx
Genotipos
Loreto
Ucayali
Madre de Dios
Amazonía
topic Dipteryx charapilla
Dipteryx micrantha
Variación genética
Distancia genética
Microsatélites
Secuencia de ADN
Dipteryx
Genotipos
Loreto
Ucayali
Madre de Dios
Amazonía
description There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.
publishDate 2019
dc.date.accessioned.none.fl_str_mv 2019-12-23T14:50:53Z
dc.date.available.none.fl_str_mv 2019-12-23T14:50:53Z
dc.date.issued.fl_str_mv 2019-12
dc.type.es_ES.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.citation.es_ES.fl_str_mv Genetica (2019): 1-12
dc.identifier.issn.none.fl_str_mv 1573-6857
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12921/418
https://doi.org/10.1007/s10709-019-00082-2
dc.identifier.journal.es_ES.fl_str_mv Genetica
dc.identifier.doi.es_ES.fl_str_mv https://doi.org/10.1007/s10709-019-00082-2
identifier_str_mv Genetica (2019): 1-12
1573-6857
Genetica
url https://hdl.handle.net/20.500.12921/418
https://doi.org/10.1007/s10709-019-00082-2
dc.language.iso.es_ES.fl_str_mv eng
language eng
dc.relation.es_ES.fl_str_mv info:eu-repo/semantics/article
dc.relation.uri.es_ES.fl_str_mv https://link.springer.com/article/10.1007%2Fs10709-019-00082-2
dc.rights.es_ES.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.es_ES.fl_str_mv All Rights Reserved Springer Nature Switzerland AG 2019
eu_rights_str_mv openAccess
rights_invalid_str_mv All Rights Reserved Springer Nature Switzerland AG 2019
dc.format.es_ES.fl_str_mv application/pdf
dc.publisher.es_ES.fl_str_mv Springer Nature
dc.source.es_ES.fl_str_mv Instituto de Investigaciones de la Amazonía Peruana
Repositorio Institucional - IIAP
dc.source.none.fl_str_mv reponame:IIAP-Institucional
instname:Instituto de investigaciones de la Amazonía Peruana
instacron:IIAP
instname_str Instituto de investigaciones de la Amazonía Peruana
instacron_str IIAP
institution IIAP
reponame_str IIAP-Institucional
collection IIAP-Institucional
bitstream.url.fl_str_mv https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/1/Garcia_articulo_2019.pdf
https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/2/licence.txt
https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/9/Garcia_articulo_2019.pdf.txt
https://repositorio.iiap.gob.pe/bitstream/20.500.12921/418/10/Garcia_articulo_2019.pdf.jpg
bitstream.checksum.fl_str_mv 0e393638d71ee0893fee9839b48bf021
d01e77160199194c1e849481498182e2
098175a23871b119e65ba152ff2f9e70
7196bb836cbf82dcc240868fece1c46a
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional del IIAP
repository.mail.fl_str_mv repositorioIIAP-help@iiap.gob.pe
_version_ 1791794425067732992
score 13.936249
Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).