Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates

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Bartonella bacilliformis is the etiologic agent of Carrion's disease, which if endemic to Peru. Studies on antimicrobial resistance genes from clinical isolates of this pathogen are scarce, and the molecular characteristics of these genes and their region resistance-associated are currently unk...

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Autores: Espinoza-Culupú, Abraham, Quispe-Gaspar, Ruth, Jaramillo, Michael, Icho, Melisa, Eca, Anika, Ramírez, Pablo, Alvarado, Débora, Guerrero, Juan Carlos, Vargas-Vásquez, Franklin, Córdova, Ofelia, García-de-la-Guarda, Ruth
Formato: artículo
Fecha de Publicación:2014
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:ojs.csi.unmsm:article/8251
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/8251
Nivel de acceso:acceso abierto
Materia:Susceptibilidad antimicrobiana
Bartonella bacilliformis
ParC
ParE
quinolonas.
antimicrobial susceptibility
quinolones.
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network_name_str Revistas - Universidad Nacional Mayor de San Marcos
repository_id_str
dc.title.none.fl_str_mv Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
Caracterización molecular de la región determinante de resistencia a quinolonas (QRDR) de la topoisomerasa IV de Bartonella bacilliformis en aislados clínicos
title Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
spellingShingle Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
Espinoza-Culupú, Abraham
Susceptibilidad antimicrobiana
Bartonella bacilliformis
ParC
ParE
quinolonas.
antimicrobial susceptibility
Bartonella bacilliformis
ParC
ParE
quinolones.
title_short Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
title_full Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
title_fullStr Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
title_full_unstemmed Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
title_sort Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolates
dc.creator.none.fl_str_mv Espinoza-Culupú, Abraham
Quispe-Gaspar, Ruth
Jaramillo, Michael
Icho, Melisa
Eca, Anika
Ramírez, Pablo
Alvarado, Débora
Guerrero, Juan Carlos
Vargas-Vásquez, Franklin
Córdova, Ofelia
García-de-la-Guarda, Ruth
author Espinoza-Culupú, Abraham
author_facet Espinoza-Culupú, Abraham
Quispe-Gaspar, Ruth
Jaramillo, Michael
Icho, Melisa
Eca, Anika
Ramírez, Pablo
Alvarado, Débora
Guerrero, Juan Carlos
Vargas-Vásquez, Franklin
Córdova, Ofelia
García-de-la-Guarda, Ruth
author_role author
author2 Quispe-Gaspar, Ruth
Jaramillo, Michael
Icho, Melisa
Eca, Anika
Ramírez, Pablo
Alvarado, Débora
Guerrero, Juan Carlos
Vargas-Vásquez, Franklin
Córdova, Ofelia
García-de-la-Guarda, Ruth
author2_role author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Susceptibilidad antimicrobiana
Bartonella bacilliformis
ParC
ParE
quinolonas.
antimicrobial susceptibility
Bartonella bacilliformis
ParC
ParE
quinolones.
topic Susceptibilidad antimicrobiana
Bartonella bacilliformis
ParC
ParE
quinolonas.
antimicrobial susceptibility
Bartonella bacilliformis
ParC
ParE
quinolones.
description Bartonella bacilliformis is the etiologic agent of Carrion's disease, which if endemic to Peru. Studies on antimicrobial resistance genes from clinical isolates of this pathogen are scarce, and the molecular characteristics of these genes and their region resistance-associated are currently unknown. In this work we made the molecular characterization of the quinolone-resistance, and establish the region (QRDR) for the topoisomerase IV, which is encoded by the parC and parE genes, as well as develop an antimicrobial susceptibility test for B. bacilliformis. 65 Blood samples from La Libertad, Cusco, Ancash and Piura were processed on Blood Agar plates and incubated at 30 °C, 5% CO2. The antimicrobial susceptibility was determined, then the genomic DNA extracted, aforementioned genes amplified, their sequence determined and it analyzed using bioinformatics tools. Six positive cultures were obtained. The isolates were susceptible to Ciprofloxacin (except one strain from Quillabamba – Cusco, which showed decreased susceptibility) and were resistant to Nalidixic Acid. From the sequence analysis of B. bacilliformis ParC and ParE there have been shown amino acid differences compared to the respective protein sequences from E. coli K12 MG1655, which is likely to confer resistance to Nalidixic Acid but not to Ciprofloxacin. It was determined that B. bacilliformis ParC and ParE proteins QRDRs are comprised between amino acids 67 to 118 and 473 to 530, respectively. The antibiogram and the minimal inhibitory concentration are best assessed using the #1 McFarland standards after a 6-day incubation period.
publishDate 2014
dc.date.none.fl_str_mv 2014-04-14
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/8251
10.15381/rpb.v21i1.8251
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/8251
identifier_str_mv 10.15381/rpb.v21i1.8251
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/8251/7194
dc.rights.none.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 21 Núm. 1 (2014); 089 - 098
Revista Peruana de Biología; Vol. 21 No. 1 (2014); 089 - 098
1727-9933
1561-0837
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
instacron:UNMSM
instname_str Universidad Nacional Mayor de San Marcos
instacron_str UNMSM
institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
repository.name.fl_str_mv
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spelling Molecular characterization of quinolones resistance determining region (QRDR) of Bartonella bacilliformis topoisomerasa IV in clinical isolatesCaracterización molecular de la región determinante de resistencia a quinolonas (QRDR) de la topoisomerasa IV de Bartonella bacilliformis en aislados clínicosEspinoza-Culupú, AbrahamQuispe-Gaspar, RuthJaramillo, MichaelIcho, MelisaEca, AnikaRamírez, PabloAlvarado, DéboraGuerrero, Juan CarlosVargas-Vásquez, FranklinCórdova, OfeliaGarcía-de-la-Guarda, RuthSusceptibilidad antimicrobianaBartonella bacilliformisParCParEquinolonas.antimicrobial susceptibilityBartonella bacilliformisParCParEquinolones.Bartonella bacilliformis is the etiologic agent of Carrion's disease, which if endemic to Peru. Studies on antimicrobial resistance genes from clinical isolates of this pathogen are scarce, and the molecular characteristics of these genes and their region resistance-associated are currently unknown. In this work we made the molecular characterization of the quinolone-resistance, and establish the region (QRDR) for the topoisomerase IV, which is encoded by the parC and parE genes, as well as develop an antimicrobial susceptibility test for B. bacilliformis. 65 Blood samples from La Libertad, Cusco, Ancash and Piura were processed on Blood Agar plates and incubated at 30 °C, 5% CO2. The antimicrobial susceptibility was determined, then the genomic DNA extracted, aforementioned genes amplified, their sequence determined and it analyzed using bioinformatics tools. Six positive cultures were obtained. The isolates were susceptible to Ciprofloxacin (except one strain from Quillabamba – Cusco, which showed decreased susceptibility) and were resistant to Nalidixic Acid. From the sequence analysis of B. bacilliformis ParC and ParE there have been shown amino acid differences compared to the respective protein sequences from E. coli K12 MG1655, which is likely to confer resistance to Nalidixic Acid but not to Ciprofloxacin. It was determined that B. bacilliformis ParC and ParE proteins QRDRs are comprised between amino acids 67 to 118 and 473 to 530, respectively. The antibiogram and the minimal inhibitory concentration are best assessed using the #1 McFarland standards after a 6-day incubation period.Bartonella bacilliformis es el agente etiológico de la Enfermedad de Carrión, endémica del Perú. Pocas investigaciones han sido realizadas acerca de los genes asociados a la resistencia antimicrobiana en aislados clínicos de este patógeno. Estos genes no están caracterizados molecularmente, ni se conoce la región asociada a dicha resistencia. Por ello, el objetivo del este trabajo fue caracterizar molecularmente la región determinante de la resistencia a las quinolonas (QRDR) en la topoisomerasa IV, que está codificada por los genes parC y parE, así como también desarrollar una prueba de susceptibilidad antimicrobiana para B. bacilliformis. Las muestras sanguíneas de 65 pacientes procedentes de La Libertad, Cusco, Ancash y Piura, se sembraron en placas de agar sangre e incubaron a 30 °C con 5% CO2. Luego se procedió a: (1) determinar la susceptibilidad antimicrobiana y (2) extraer el DNA genómico, amplificar los genes mencionados, secuenciarlos y analizarlos mediante herramientas bioinformáticas. Se obtuvieron 6 cultivos positivos. Los aislados fueron sensibles a la ciprofloxacina (excepto uno procedente de Quillabamba-Cusco, que presentó susceptibilidad disminuida) y resistentes al ácido nalidíxico. Del análisis de las secuencias aminoacídicas de ParC y ParE de B. bacilliformis se concluye que presentan diferencias aminoacídicas en comparación con las secuencias de las proteínas respectivas de E. coli K12 MG1655, que probablemente confieran resistencia al ácido nalidíxico pero no a la ciprofloxacina. Se determinó que las QRDR de las proteínas ParC y ParE de B. bacilliformis están comprendidas entre los aminoácidos 67 al 118 y 473 al 530, respectivamente. El antibiograma y la concentración mínima inhibitoria se evalúan mejor usando inóculos a escala 1 de McFarland y a los 6 días de incubación.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2014-04-14info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/825110.15381/rpb.v21i1.8251Revista Peruana de Biología; Vol. 21 Núm. 1 (2014); 089 - 098Revista Peruana de Biología; Vol. 21 No. 1 (2014); 089 - 0981727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/8251/7194Derechos de autor 2014 Abraham Espinoza-Culupú, Ruth Quispe-Gaspar, Michael Jaramillo, Melisa Icho, Anika Eca, Pablo Ramírez, Débora Alvarado, Juan Carlos Guerrero, Franklin Vargas-Vásquez, Ofelia Córdova, Ruth García-de-la-Guardahttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/82512020-05-20T19:35:48Z
score 13.959421
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