The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)

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Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repea...

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Detalles Bibliográficos
Autores: Arbizu Berrocal, Carlos Irvin, Ferro Mauricio, Rubén Darío, Chávez Galarza, Julio César, Guerrero Abad, Juan Carlos, Vásquez Pérez, Héctor Vladimir, Maicelo Quintana, Jorge Luis
Formato: artículo
Fecha de Publicación:2021
Institución:Instituto Nacional de Innovación Agraria
Repositorio:INIA-Institucional
Lenguaje:inglés
OAI Identifier:oai:null:20.500.12955/1470
Enlace del recurso:https://hdl.handle.net/20.500.12955/1470
https://doi.org/10.1080/23802359.2021.1969697
Nivel de acceso:acceso abierto
Materia:Phylogenomics
Rubiaceae
Chloroplast genoma
Quina tree
https://purl.org/pe-repo/ocde/ford#4.04.02
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dc.title.es_PE.fl_str_mv The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
title The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
spellingShingle The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
Arbizu Berrocal, Carlos Irvin
Phylogenomics
Rubiaceae
Chloroplast genoma
Quina tree
https://purl.org/pe-repo/ocde/ford#4.04.02
title_short The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
title_full The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
title_fullStr The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
title_full_unstemmed The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
title_sort The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
author Arbizu Berrocal, Carlos Irvin
author_facet Arbizu Berrocal, Carlos Irvin
Ferro Mauricio, Rubén Darío
Chávez Galarza, Julio César
Guerrero Abad, Juan Carlos
Vásquez Pérez, Héctor Vladimir
Maicelo Quintana, Jorge Luis
author_role author
author2 Ferro Mauricio, Rubén Darío
Chávez Galarza, Julio César
Guerrero Abad, Juan Carlos
Vásquez Pérez, Héctor Vladimir
Maicelo Quintana, Jorge Luis
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Arbizu Berrocal, Carlos Irvin
Ferro Mauricio, Rubén Darío
Chávez Galarza, Julio César
Guerrero Abad, Juan Carlos
Vásquez Pérez, Héctor Vladimir
Maicelo Quintana, Jorge Luis
dc.subject.es_PE.fl_str_mv Phylogenomics
Rubiaceae
Chloroplast genoma
Quina tree
topic Phylogenomics
Rubiaceae
Chloroplast genoma
Quina tree
https://purl.org/pe-repo/ocde/ford#4.04.02
dc.subject.ocde.es_PE.fl_str_mv https://purl.org/pe-repo/ocde/ford#4.04.02
description Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family.
publishDate 2021
dc.date.accessioned.none.fl_str_mv 2021-09-10T14:06:26Z
dc.date.available.none.fl_str_mv 2021-09-10T14:06:26Z
dc.date.issued.fl_str_mv 2021-09-06
dc.type.es_PE.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.citation.es_PE.fl_str_mv Arbizu, C.; Ferro, R.; Chávez, J.; Guerrero, J.; Vásquez, H. & Maicelo, J. (2021). The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae). Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783. doi: 10.1080/23802359.2021.1969697
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12955/1470
dc.identifier.journal.es_PE.fl_str_mv Mitochondrial DNA Part B
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1080/23802359.2021.1969697
identifier_str_mv Arbizu, C.; Ferro, R.; Chávez, J.; Guerrero, J.; Vásquez, H. & Maicelo, J. (2021). The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae). Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783. doi: 10.1080/23802359.2021.1969697
Mitochondrial DNA Part B
url https://hdl.handle.net/20.500.12955/1470
https://doi.org/10.1080/23802359.2021.1969697
dc.language.iso.es_PE.fl_str_mv eng
language eng
dc.relation.ispartof.es_PE.fl_str_mv Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783
dc.relation.publisherversion.es_PE.fl_str_mv https://doi.org/10.1080/23802359.2021.1969697
dc.rights.es_PE.fl_str_mv info:eu-repo/semantics/openAccess
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eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
dc.format.es_PE.fl_str_mv application/pdf
dc.coverage.spatial.es_PE.fl_str_mv Perú
dc.publisher.es_PE.fl_str_mv Taylor & Francis
dc.publisher.country.es_PE.fl_str_mv Inglaterra
dc.source.es_PE.fl_str_mv Instituto Nacional de Innovación Agraria
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spelling Arbizu Berrocal, Carlos IrvinFerro Mauricio, Rubén DaríoChávez Galarza, Julio CésarGuerrero Abad, Juan CarlosVásquez Pérez, Héctor VladimirMaicelo Quintana, Jorge LuisPerú2021-09-10T14:06:26Z2021-09-10T14:06:26Z2021-09-06Arbizu, C.; Ferro, R.; Chávez, J.; Guerrero, J.; Vásquez, H. & Maicelo, J. (2021). The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae). Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783. doi: 10.1080/23802359.2021.1969697https://hdl.handle.net/20.500.12955/1470Mitochondrial DNA Part Bhttps://doi.org/10.1080/23802359.2021.1969697Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. 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The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
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