Genome sequence and analysis of the tuber crop potato

Xu X.; Pan S.; Cheng S.; Zhang B.; Mu D.; Ni P.; Zhang G.; Yang S.; Li R.; Wang J.; Orjeda G.; Guzman F.; Torres M.; Lozano R.; Ponce O.; Martinez D.; De La Cruz G.; Chakrabarti S.K.; Patil V.U.; Skryabin G.; Kuznetsov B.B.; Ravin N.V.; Kolganova T.V.; Beletsky A.V.; Mardanov A.V.; Di Genova A.; Bolser D.M.; Martin D.M.A.; Li G.; Yang Y.; Kuang H.; Hu Q.; Xiong X.; Bishop G.J.; Sagredo B.; Mejía N.; Zagorski W.; Gromadka R.; Gawor J.; Szczesny P.; Huang S.; Zhang Z.; Liang C.; He J.; Li Y.; He Y.; Xu J.; Zhang Y.; Xie B.; Du Y.; Qu D.; Bonierbale M.; Ghislain M.; Herrera M.D.R.; Giuliano G.; Pietrella M.; Perrotta G.; Facella P.; O'Brien K.; Feingold S.E.; Barreiro L.E.; Massa G.A.; Diambra L.; Whitty B.R.; Vaillancourt B.; Lin H.; Massa A.N.; Geoffroy M.; Lundback S.; DellaPenna D.; Buell C.R.; Sharma S.K.; Marshall D.F.; Waugh R.; Bryan G.J.; Destefanis M.; Nagy I.; Milbourne D.; Thomson S.J.; Fiers M.; Jacobs J.M.E.; Nielsen K.L.; Sønderkær M.; Iovene M.; Torres G.A.; Jiang J.; Veilleux R.E.; Bachem C.W.B.; De Boer J.; Borm T.; Kloosterman B.; Van Eck H.; Datema E.; Hekkert B.L.; Goverse A.; Van Ham R.C.H.J.; Visser R.G.F.

Genome sequence and analysis of the tuber crop potato

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Peruvian Ministry of Agriculture-Technical Secretariat of coordination with the CGIAR, Peruvian National Council of Science and Technology (CONCYTEC), Polish Ministry of Science and Higher Education (47/PGS/2006/01), Programa Cooperativo para el Desarrollo Tecnológico Agroalimentario y Agroindustria...

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Detalles Bibliográficos
Autores:	Xu X., Pan S., Cheng S., Zhang B., Mu D., Ni P., Zhang G., Yang S., Li R., Wang J., Orjeda G., Guzman F., Torres M., Lozano R., Ponce O., Martinez D., De La Cruz G., Chakrabarti S.K., Patil V.U., Skryabin G., Kuznetsov B.B., Ravin N.V., Kolganova T.V., Beletsky A.V., Mardanov A.V., Di Genova A., Bolser D.M., Martin D.M.A., Li G., Yang Y., Kuang H., Hu Q., Xiong X., Bishop G.J., Sagredo B., Mejía N., Zagorski W., Gromadka R., Gawor J., Szczesny P., Huang S., Zhang Z., Liang C., He J., Li Y., He Y., Xu J., Zhang Y., Xie B., Du Y., Qu D., Bonierbale M., Ghislain M., Herrera M.D.R., Giuliano G., Pietrella M., Perrotta G., Facella P., O'Brien K., Feingold S.E., Barreiro L.E., Massa G.A., Diambra L., Whitty B.R., Vaillancourt B., Lin H., Massa A.N., Geoffroy M., Lundback S., DellaPenna D., Buell C.R., Sharma S.K., Marshall D.F., Waugh R., Bryan G.J., Destefanis M., Nagy I., Milbourne D., Thomson S.J., Fiers M., Jacobs J.M.E., Nielsen K.L., Sønderkær M., Iovene M., Torres G.A., Jiang J., Veilleux R.E., Bachem C.W.B., De Boer J., Borm T., Kloosterman B., Van Eck H., Datema E., Hekkert B.L., Goverse A., Van Ham R.C.H.J., Visser R.G.F.
Formato:	artículo
Fecha de Publicación:	2011
Institución:	Consejo Nacional de Ciencia Tecnología e Innovación
Repositorio:	CONCYTEC-Institucional
Lenguaje:	inglés
OAI Identifier:	oai:repositorio.concytec.gob.pe:20.500.12390/691
Enlace del recurso:	https://hdl.handle.net/20.500.12390/691 https://doi.org/10.1038/nature10158
Nivel de acceso:	acceso abierto
Materia:	tuber evolutionary biology food security gene expression genetic analysis genome inbreeding depression potato angiosperm https://purl.org/pe-repo/ocde/ford#4.00.00

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network_name_str	CONCYTEC-Institucional
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dc.title.none.fl_str_mv	Genome sequence and analysis of the tuber crop potato
title	Genome sequence and analysis of the tuber crop potato
spellingShingle	Genome sequence and analysis of the tuber crop potato Xu X. tuber evolutionary biology food security gene expression genetic analysis genome inbreeding depression potato angiosperm https://purl.org/pe-repo/ocde/ford#4.00.00
title_short	Genome sequence and analysis of the tuber crop potato
title_full	Genome sequence and analysis of the tuber crop potato
title_fullStr	Genome sequence and analysis of the tuber crop potato
title_full_unstemmed	Genome sequence and analysis of the tuber crop potato
title_sort	Genome sequence and analysis of the tuber crop potato
author	Xu X.
author_facet	Xu X. Pan S. Cheng S. Zhang B. Mu D. Ni P. Zhang G. Yang S. Li R. Wang J. Orjeda G. Guzman F. Torres M. Lozano R. Ponce O. Martinez D. De La Cruz G. Chakrabarti S.K. Patil V.U. Skryabin G. Kuznetsov B.B. Ravin N.V. Kolganova T.V. Beletsky A.V. Mardanov A.V. Di Genova A. Bolser D.M. Martin D.M.A. Li G. Yang Y. Kuang H. Hu Q. Xiong X. Bishop G.J. Sagredo B. Mejía N. Zagorski W. Gromadka R. Gawor J. Szczesny P. Huang S. Zhang Z. Liang C. He J. Li Y. He Y. Xu J. Zhang Y. Xie B. Du Y. Qu D. Bonierbale M. Ghislain M. Herrera M.D.R. Giuliano G. Pietrella M. Perrotta G. Facella P. O'Brien K. Feingold S.E. Barreiro L.E. Massa G.A. Diambra L. Whitty B.R. Vaillancourt B. Lin H. Massa A.N. Geoffroy M. Lundback S. DellaPenna D. Buell C.R. Sharma S.K. Marshall D.F. Waugh R. Bryan G.J. Destefanis M. Nagy I. Milbourne D. Thomson S.J. Fiers M. Jacobs J.M.E. Nielsen K.L. Sønderkær M. Iovene M. Torres G.A. Jiang J. Veilleux R.E. Bachem C.W.B. De Boer J. Borm T. Kloosterman B. Van Eck H. Datema E. Hekkert B.L. Goverse A. Van Ham R.C.H.J. Visser R.G.F.
author_role	author
author2	Pan S. Cheng S. Zhang B. Mu D. Ni P. Zhang G. Yang S. Li R. Wang J. Orjeda G. Guzman F. Torres M. Lozano R. Ponce O. Martinez D. De La Cruz G. Chakrabarti S.K. Patil V.U. Skryabin G. Kuznetsov B.B. Ravin N.V. Kolganova T.V. Beletsky A.V. Mardanov A.V. Di Genova A. Bolser D.M. Martin D.M.A. Li G. Yang Y. Kuang H. Hu Q. Xiong X. Bishop G.J. Sagredo B. Mejía N. Zagorski W. Gromadka R. Gawor J. Szczesny P. Huang S. Zhang Z. Liang C. He J. Li Y. He Y. Xu J. Zhang Y. Xie B. Du Y. Qu D. Bonierbale M. Ghislain M. Herrera M.D.R. Giuliano G. Pietrella M. Perrotta G. Facella P. O'Brien K. Feingold S.E. Barreiro L.E. Massa G.A. Diambra L. Whitty B.R. Vaillancourt B. Lin H. Massa A.N. Geoffroy M. Lundback S. DellaPenna D. Buell C.R. Sharma S.K. Marshall D.F. Waugh R. Bryan G.J. Destefanis M. Nagy I. Milbourne D. Thomson S.J. Fiers M. Jacobs J.M.E. Nielsen K.L. Sønderkær M. Iovene M. Torres G.A. Jiang J. Veilleux R.E. Bachem C.W.B. De Boer J. Borm T. Kloosterman B. Van Eck H. Datema E. Hekkert B.L. Goverse A. Van Ham R.C.H.J. Visser R.G.F.
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.contributor.author.fl_str_mv	Xu X. Pan S. Cheng S. Zhang B. Mu D. Ni P. Zhang G. Yang S. Li R. Wang J. Orjeda G. Guzman F. Torres M. Lozano R. Ponce O. Martinez D. De La Cruz G. Chakrabarti S.K. Patil V.U. Skryabin G. Kuznetsov B.B. Ravin N.V. Kolganova T.V. Beletsky A.V. Mardanov A.V. Di Genova A. Bolser D.M. Martin D.M.A. Li G. Yang Y. Kuang H. Hu Q. Xiong X. Bishop G.J. Sagredo B. Mejía N. Zagorski W. Gromadka R. Gawor J. Szczesny P. Huang S. Zhang Z. Liang C. He J. Li Y. He Y. Xu J. Zhang Y. Xie B. Du Y. Qu D. Bonierbale M. Ghislain M. Herrera M.D.R. Giuliano G. Pietrella M. Perrotta G. Facella P. O'Brien K. Feingold S.E. Barreiro L.E. Massa G.A. Diambra L. Whitty B.R. Vaillancourt B. Lin H. Massa A.N. Geoffroy M. Lundback S. DellaPenna D. Buell C.R. Sharma S.K. Marshall D.F. Waugh R. Bryan G.J. Destefanis M. Nagy I. Milbourne D. Thomson S.J. Fiers M. Jacobs J.M.E. Nielsen K.L. Sønderkær M. Iovene M. Torres G.A. Jiang J. Veilleux R.E. Bachem C.W.B. De Boer J. Borm T. Kloosterman B. Van Eck H. Datema E. Hekkert B.L. Goverse A. Van Ham R.C.H.J. Visser R.G.F.
dc.subject.none.fl_str_mv	tuber
topic	tuber evolutionary biology food security gene expression genetic analysis genome inbreeding depression potato angiosperm https://purl.org/pe-repo/ocde/ford#4.00.00
dc.subject.es_PE.fl_str_mv	evolutionary biology food security gene expression genetic analysis genome inbreeding depression potato angiosperm
dc.subject.ocde.none.fl_str_mv	https://purl.org/pe-repo/ocde/ford#4.00.00
description	Peruvian Ministry of Agriculture-Technical Secretariat of coordination with the CGIAR, Peruvian National Council of Science and Technology (CONCYTEC), Polish Ministry of Science and Higher Education (47/PGS/2006/01), Programa Cooperativo para el Desarrollo Tecnológico Agroalimentario y Agroindustrial del Cono Sur (PROCISUR), Project Programa Bicentenario de Ciencia y Tecnologı´a - Conicyt, PBCT - Conicyt PSD-03, Russian Foundation for Basic Research (09-04-12275)
publishDate	2011
dc.date.accessioned.none.fl_str_mv	2024-05-30T23:13:38Z
dc.date.available.none.fl_str_mv	2024-05-30T23:13:38Z
dc.date.issued.fl_str_mv	2011
dc.type.none.fl_str_mv	info:eu-repo/semantics/article
format	article
dc.identifier.uri.none.fl_str_mv	https://hdl.handle.net/20.500.12390/691
dc.identifier.doi.none.fl_str_mv	https://doi.org/10.1038/nature10158
dc.identifier.scopus.none.fl_str_mv	2-s2.0-79960422847
url	https://hdl.handle.net/20.500.12390/691 https://doi.org/10.1038/nature10158
identifier_str_mv	2-s2.0-79960422847
dc.language.iso.none.fl_str_mv	eng
language	eng
dc.relation.ispartof.none.fl_str_mv	Nature
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess
dc.rights.uri.none.fl_str_mv	https://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv	openAccess
rights_invalid_str_mv	https://creativecommons.org/licenses/by/4.0/
dc.publisher.none.fl_str_mv	Springer Nature Limited
publisher.none.fl_str_mv	Springer Nature Limited
dc.source.none.fl_str_mv	reponame:CONCYTEC-Institucional instname:Consejo Nacional de Ciencia Tecnología e Innovación instacron:CONCYTEC
instname_str	Consejo Nacional de Ciencia Tecnología e Innovación
instacron_str	CONCYTEC
institution	CONCYTEC
reponame_str	CONCYTEC-Institucional
collection	CONCYTEC-Institucional
repository.name.fl_str_mv	Repositorio Institucional CONCYTEC
repository.mail.fl_str_mv	repositorio@concytec.gob.pe
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spelling	Publicationrp01584600rp01638600rp01662600rp01600600rp01604600rp01658600rp01647600rp01429400rp01666600rp01607600rp01572600rp01620600rp01632600rp00555500rp01644600rp01648600rp01611600rp01610600rp01606600rp01598600rp01641600rp01639600rp01665600rp01575600rp01579600rp01602600rp01576600rp01573600rp01613600rp01657600rp01615600rp01623600rp01605600rp01663600rp01653600rp01618600rp01654600rp01664600rp01603600rp01659600rp01589600rp01626600rp01601600rp01655600rp01583600rp01581600rp01635600rp01651600rp01577600rp01599600rp01633600rp01586600rp01631600rp01616600rp01585600rp01625600rp01594600rp01592600rp01590600rp01652600rp01636600rp01624600rp01617600rp01643600rp01593600rp01591600rp01630600rp01645600rp01661600rp01619600rp01640600rp01649600rp01627600rp01596600rp01578600rp01574600rp01608600rp01634600rp01587600rp01580600rp01588600rp01660600rp01612600rp01621600rp01629600rp01597600rp01637600rp01656600rp01646600rp01582600rp01609600rp01628600rp01595600rp01650600rp01642600rp01614600rp01622600Xu X.Pan S.Cheng S.Zhang B.Mu D.Ni P.Zhang G.Yang S.Li R.Wang J.Orjeda G.Guzman F.Torres M.Lozano R.Ponce O.Martinez D.De La Cruz G.Chakrabarti S.K.Patil V.U.Skryabin G.Kuznetsov B.B.Ravin N.V.Kolganova T.V.Beletsky A.V.Mardanov A.V.Di Genova A.Bolser D.M.Martin D.M.A.Li G.Yang Y.Kuang H.Hu Q.Xiong X.Bishop G.J.Sagredo B.Mejía N.Zagorski W.Gromadka R.Gawor J.Szczesny P.Huang S.Zhang Z.Liang C.He J.Li Y.He Y.Xu J.Zhang Y.Xie B.Du Y.Qu D.Bonierbale M.Ghislain M.Herrera M.D.R.Giuliano G.Pietrella M.Perrotta G.Facella P.O'Brien K.Feingold S.E.Barreiro L.E.Massa G.A.Diambra L.Whitty B.R.Vaillancourt B.Lin H.Massa A.N.Geoffroy M.Lundback S.DellaPenna D.Buell C.R.Sharma S.K.Marshall D.F.Waugh R.Bryan G.J.Destefanis M.Nagy I.Milbourne D.Thomson S.J.Fiers M.Jacobs J.M.E.Nielsen K.L.Sønderkær M.Iovene M.Torres G.A.Jiang J.Veilleux R.E.Bachem C.W.B.De Boer J.Borm T.Kloosterman B.Van Eck H.Datema E.Hekkert B.L.Goverse A.Van Ham R.C.H.J.Visser R.G.F.2024-05-30T23:13:38Z2024-05-30T23:13:38Z2011https://hdl.handle.net/20.500.12390/691https://doi.org/10.1038/nature101582-s2.0-79960422847Peruvian Ministry of Agriculture-Technical Secretariat of coordination with the CGIAR, Peruvian National Council of Science and Technology (CONCYTEC), Polish Ministry of Science and Higher Education (47/PGS/2006/01), Programa Cooperativo para el Desarrollo Tecnológico Agroalimentario y Agroindustrial del Cono Sur (PROCISUR), Project Programa Bicentenario de Ciencia y Tecnologı´a - Conicyt, PBCT - Conicyt PSD-03, Russian Foundation for Basic Research (09-04-12275)Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengSpringer Nature LimitedNatureinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/tuberevolutionary biology-1food security-1gene expression-1genetic analysis-1genome-1inbreeding depression-1potato-1angiosperm-1https://purl.org/pe-repo/ocde/ford#4.00.00-1Genome sequence and analysis of the tuber crop potatoinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC#PLACEHOLDER_PARENT_METADATA_VALUE#20.500.12390/691oai:repositorio.concytec.gob.pe:20.500.12390/6912024-05-30 15:44:37.392https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only 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C.W.B.</DisplayName> <Person id="rp01656" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>De Boer J.</DisplayName> <Person id="rp01646" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Borm T.</DisplayName> <Person id="rp01582" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Kloosterman B.</DisplayName> <Person id="rp01609" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Van Eck H.</DisplayName> <Person id="rp01628" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Datema E.</DisplayName> <Person id="rp01595" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Hekkert B.L.</DisplayName> <Person id="rp01650" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Goverse A.</DisplayName> <Person id="rp01642" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Van Ham R.C.H.J.</DisplayName> <Person id="rp01614" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Visser R.G.F.</DisplayName> <Person id="rp01622" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>Springer Nature Limited</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by/4.0/</License> <Keyword>tuber</Keyword> <Keyword>evolutionary biology</Keyword> <Keyword>food security</Keyword> <Keyword>gene expression</Keyword> <Keyword>genetic analysis</Keyword> <Keyword>genome</Keyword> <Keyword>inbreeding depression</Keyword> <Keyword>potato</Keyword> <Keyword>angiosperm</Keyword> <Abstract>Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1
score	13.394457

Genome sequence and analysis of the tuber crop potato

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Genome sequence and analysis of the tuber crop potato

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