The presence of heavy metals in agricultural soils poses a threat to the development of sustainable agriculture and ensuring food security. The objective of this study was to evaluate the geospatial distribution of heavy metals in rice-growing soils within the Amojú River Basin, Jaen, Peru. Ninety-five soil samples were collected randomly, covering four altitudinal ranges, namely, very low (374–450 m above sea level (m a.s.l.)), low (450–571 m a.s.l.), medium (571–701 m a.s.l.) and high altitudes (701–1,034 m a.s.l.), and different agronomic management stages, including four phenological phases (seedling, tillering, filling and ripening) and two agricultural practices (resting and stubble burning). The evaluation was conducted via physicochemical analysis, the single-factor pollution index, and spatial interpolation techniques through the empirical Bayesian kriging (EBK) method....