Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination
Descripción del Articulo
Many species of chili peppers have overlapping morphological characters and delimitation by visual descriptors in many cases fails to differentiate one species from another. In Peru, there are 413 accessions of native chili pepper and 296 accessions of rocotos conserved in the Germplasm Collections...
Autores: | , , , , |
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Formato: | artículo |
Fecha de Publicación: | 2022 |
Institución: | Instituto Nacional de Innovación Agraria |
Repositorio: | INIA-Institucional |
Lenguaje: | inglés |
OAI Identifier: | oai:null:20.500.12955/1813 |
Enlace del recurso: | https://hdl.handle.net/20.500.12955/1813 https://doi.org/10.1016/j.foodchem.2022.132704 |
Nivel de acceso: | acceso abierto |
Materia: | Metabolomic Capsicum Peruvian native chili peppers OPLS-DA SUS-plot Biomarkers https://purl.org/pe-repo/ocde/ford#4.04.00 Guindilla |
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dc.title.es_PE.fl_str_mv |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
title |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
spellingShingle |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination Espichán, Fabio Metabolomic Capsicum Peruvian native chili peppers OPLS-DA SUS-plot Biomarkers https://purl.org/pe-repo/ocde/ford#4.04.00 Guindilla |
title_short |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
title_full |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
title_fullStr |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
title_full_unstemmed |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
title_sort |
Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination |
author |
Espichán, Fabio |
author_facet |
Espichán, Fabio Rojas, Rosario Quispe Jacobo, Fredy Enrique Cabanac, Guillaume Marti, Guillaume |
author_role |
author |
author2 |
Rojas, Rosario Quispe Jacobo, Fredy Enrique Cabanac, Guillaume Marti, Guillaume |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Espichán, Fabio Rojas, Rosario Quispe Jacobo, Fredy Enrique Cabanac, Guillaume Marti, Guillaume |
dc.subject.es_PE.fl_str_mv |
Metabolomic Capsicum Peruvian native chili peppers |
topic |
Metabolomic Capsicum Peruvian native chili peppers OPLS-DA SUS-plot Biomarkers https://purl.org/pe-repo/ocde/ford#4.04.00 Guindilla |
dc.subject.en.fl_str_mv |
OPLS-DA SUS-plot Biomarkers |
dc.subject.ocde.es_PE.fl_str_mv |
https://purl.org/pe-repo/ocde/ford#4.04.00 |
dc.subject.agrovoc.es_PE.fl_str_mv |
Guindilla |
description |
Many species of chili peppers have overlapping morphological characters and delimitation by visual descriptors in many cases fails to differentiate one species from another. In Peru, there are 413 accessions of native chili pepper and 296 accessions of rocotos conserved in the Germplasm Collections of the National Institute of Agrarian Innovation (INIA), of which five accessions (three species from three locations) were selected for the present metabolomic study. The Discrimination of the three species of native chili peppers and identification of biomarkers was performed using untargeted metabolomic approach based on profiling by UHPLC-HRMS and multivariate data analysis. The samples of fresh chili peppers (whole fruit) from Chincha area were used to construct an OPLS-DA model. To validate the biomarkers (identified 15 biomarkers, mainly flavonoids), an external validation set of the OPLS-DA model was constructed using Chiclayo and Huaral collection datasets. Consequently, the OPLS-DA based on Chincha samples model has a high predictive capacity demonstrating that the biomarkers have a high probability of continuity in any culture space, being successful in discriminating the species by untargeted metabolomics. |
publishDate |
2022 |
dc.date.accessioned.none.fl_str_mv |
2022-08-04T21:51:09Z |
dc.date.available.none.fl_str_mv |
2022-08-04T21:51:09Z |
dc.date.issued.fl_str_mv |
2022-03-17 |
dc.type.es_PE.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
dc.identifier.citation.es_PE.fl_str_mv |
Fabio Espichán, Rosario Rojas, Fredy Quispe, Guillaume Cabanac, Guillaume Marti, Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination, Food Chemistry, Volume 386, 2022, 132704, ISSN 0308-8146. doi: 10.1016/j.foodchem.2022.132704. |
dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12955/1813 |
dc.identifier.journal.es_PE.fl_str_mv |
Food Chemistry |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1016/j.foodchem.2022.132704 |
identifier_str_mv |
Fabio Espichán, Rosario Rojas, Fredy Quispe, Guillaume Cabanac, Guillaume Marti, Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination, Food Chemistry, Volume 386, 2022, 132704, ISSN 0308-8146. doi: 10.1016/j.foodchem.2022.132704. Food Chemistry |
url |
https://hdl.handle.net/20.500.12955/1813 https://doi.org/10.1016/j.foodchem.2022.132704 |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.relation.publisherversion.es_PE.fl_str_mv |
https://doi.org/10.1016/j.foodchem.2022.132704 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.none.fl_str_mv |
https://creativecommons.org/licenses/by/4.0/ |
eu_rights_str_mv |
openAccess |
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https://creativecommons.org/licenses/by/4.0/ |
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application/pdf |
dc.coverage.spatial.es_PE.fl_str_mv |
Perú |
dc.publisher.none.fl_str_mv |
Elsevier |
dc.publisher.country.es_PE.fl_str_mv |
Suiza |
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Elsevier |
dc.source.es_PE.fl_str_mv |
Instituto Nacional de Innovación Agraria |
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Instituto Nacional de Innovación Agraria |
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Espichán, FabioRojas, RosarioQuispe Jacobo, Fredy EnriqueCabanac, GuillaumeMarti, GuillaumePerú2022-08-04T21:51:09Z2022-08-04T21:51:09Z2022-03-17Fabio Espichán, Rosario Rojas, Fredy Quispe, Guillaume Cabanac, Guillaume Marti, Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination, Food Chemistry, Volume 386, 2022, 132704, ISSN 0308-8146. doi: 10.1016/j.foodchem.2022.132704.https://hdl.handle.net/20.500.12955/1813Food Chemistryhttps://doi.org/10.1016/j.foodchem.2022.132704Many species of chili peppers have overlapping morphological characters and delimitation by visual descriptors in many cases fails to differentiate one species from another. In Peru, there are 413 accessions of native chili pepper and 296 accessions of rocotos conserved in the Germplasm Collections of the National Institute of Agrarian Innovation (INIA), of which five accessions (three species from three locations) were selected for the present metabolomic study. The Discrimination of the three species of native chili peppers and identification of biomarkers was performed using untargeted metabolomic approach based on profiling by UHPLC-HRMS and multivariate data analysis. The samples of fresh chili peppers (whole fruit) from Chincha area were used to construct an OPLS-DA model. To validate the biomarkers (identified 15 biomarkers, mainly flavonoids), an external validation set of the OPLS-DA model was constructed using Chiclayo and Huaral collection datasets. Consequently, the OPLS-DA based on Chincha samples model has a high predictive capacity demonstrating that the biomarkers have a high probability of continuity in any culture space, being successful in discriminating the species by untargeted metabolomics.Abstract. 1. Introduction. 2. Material and methods. 3. Results. 4. Discussion.application/pdfengElsevierSuizainfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/Instituto Nacional de Innovación AgrariaRepositorio Institucional - INIAreponame:INIA-Institucionalinstname:Instituto Nacional de Innovación Agrariainstacron:INIAMetabolomicCapsicumPeruvian native chili peppersOPLS-DASUS-plotBiomarkershttps://purl.org/pe-repo/ocde/ford#4.04.00GuindillaMetabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discriminationinfo:eu-repo/semantics/articlehttps://doi.org/10.1016/j.foodchem.2022.132704LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.inia.gob.pe/bitstreams/5e334d17-2ed2-4bf9-91c1-edc494e09f7f/download8a4605be74aa9ea9d79846c1fba20a33MD52TEXTMetabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination.pdf.txtMetabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination.pdf.txtExtracted texttext/plain68946https://repositorio.inia.gob.pe/bitstreams/939191b7-005c-4c59-8acc-c5657fb03ece/download694d9b322fd16379682ad5fe6beb05d2MD53Espichán-et-al_2022_Chili_Peppers_Peru.pdf.txtEspichán-et-al_2022_Chili_Peppers_Peru.pdf.txtExtracted texttext/plain68946https://repositorio.inia.gob.pe/bitstreams/d0eda78e-f300-4e0c-9855-42508cedc64c/download694d9b322fd16379682ad5fe6beb05d2MD56THUMBNAILMetabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination.pdf.jpgMetabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination.pdf.jpgGenerated Thumbnailimage/jpeg1666https://repositorio.inia.gob.pe/bitstreams/2f13134a-b065-41b8-9a9f-bbfd78ed33b8/download657a7127550e2522a0344c0a9275c6aaMD54Espichán-et-al_2022_Chili_Peppers_Peru.pdf.jpgEspichán-et-al_2022_Chili_Peppers_Peru.pdf.jpgGenerated Thumbnailimage/jpeg1666https://repositorio.inia.gob.pe/bitstreams/b2a2834c-85bb-46b8-b057-41081759542b/download657a7127550e2522a0344c0a9275c6aaMD57ORIGINALEspichán-et-al_2022_Chili_Peppers_Peru.pdfEspichán-et-al_2022_Chili_Peppers_Peru.pdfapplication/pdf4839679https://repositorio.inia.gob.pe/bitstreams/fe66304e-8a39-4dec-a4e9-cefc8007b35c/download0bb33d481d6301aee436da2fb8a894d6MD5520.500.12955/1813oai:repositorio.inia.gob.pe:20.500.12955/18132022-11-21 15:01:54.608https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessopen.accesshttps://repositorio.inia.gob.peRepositorio Institucional INIArepositorio@inia.gob.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 |
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Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).