Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize
Descripción del Articulo
Fusarium verticillioides represents a major phytopathogenic threat to maize crops worldwide. In this study, we present genomic sequence data of a phytopathogen isolated from a maize stem that shows obvious signs of vascular rot. Using rigorous microbiological identification techniques, we correlated...
Autores: | , , , , , , , |
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Formato: | artículo |
Fecha de Publicación: | 2024 |
Institución: | Instituto Nacional de Innovación Agraria |
Repositorio: | INIA-Institucional |
Lenguaje: | inglés |
OAI Identifier: | oai:repositorio.inia.gob.pe:20.500.12955/2601 |
Enlace del recurso: | https://hdl.handle.net/20.500.12955/2601 https://doi.org/10.1016/j.dib.2024.110951 |
Nivel de acceso: | acceso abierto |
Materia: | Genome sequencing Vascular rot SSR data mining https://purl.org/pe-repo/ocde/ford#4.01.06 Genomes Genoma Plant diseases Enfermedades de las plantas Data mining Minería de datos |
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dc.title.es_PE.fl_str_mv |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
title |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
spellingShingle |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize Estrada Cañari, Richard Genome sequencing Vascular rot SSR data mining https://purl.org/pe-repo/ocde/ford#4.01.06 Genomes Genoma Plant diseases Enfermedades de las plantas Data mining Minería de datos |
title_short |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
title_full |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
title_fullStr |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
title_full_unstemmed |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
title_sort |
Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize |
author |
Estrada Cañari, Richard |
author_facet |
Estrada Cañari, Richard Aragón, Liliana Pérez Porras, Wendy E. Romero Avila, Yolanda Martínez Vidal, Gabriel García, Karina Cruz Luis, Juancarlos Arbizu Berrocal, Carlos I. |
author_role |
author |
author2 |
Aragón, Liliana Pérez Porras, Wendy E. Romero Avila, Yolanda Martínez Vidal, Gabriel García, Karina Cruz Luis, Juancarlos Arbizu Berrocal, Carlos I. |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Estrada Cañari, Richard Aragón, Liliana Pérez Porras, Wendy E. Romero Avila, Yolanda Martínez Vidal, Gabriel García, Karina Cruz Luis, Juancarlos Arbizu Berrocal, Carlos I. |
dc.subject.es_PE.fl_str_mv |
Genome sequencing Vascular rot SSR data mining |
topic |
Genome sequencing Vascular rot SSR data mining https://purl.org/pe-repo/ocde/ford#4.01.06 Genomes Genoma Plant diseases Enfermedades de las plantas Data mining Minería de datos |
dc.subject.ocde.es_PE.fl_str_mv |
https://purl.org/pe-repo/ocde/ford#4.01.06 |
dc.subject.agrovoc.es_PE.fl_str_mv |
Genomes Genoma Plant diseases Enfermedades de las plantas Data mining Minería de datos |
description |
Fusarium verticillioides represents a major phytopathogenic threat to maize crops worldwide. In this study, we present genomic sequence data of a phytopathogen isolated from a maize stem that shows obvious signs of vascular rot. Using rigorous microbiological identification techniques, we correlated the disease symptoms observed in an affected maize region with the presence of the pathogen. Subsequently, the pathogen was cultured in a suitable fungal growth medium and extensive morphological characterization was performed. In addition, a pathogenicity test was carried out in a DCA model with three treatments and seven repetitions. De novo assembly from Illumina Novaseq 60 0 0 sequencing yielded 456 contigs, which together constitute a 42.8 Mb genome assembly with a GC % content of 48.26. Subsequent comparative analyses were performed with other Fusarium genomes available in the NCBI database. |
publishDate |
2024 |
dc.date.accessioned.none.fl_str_mv |
2024-11-04T04:24:01Z |
dc.date.available.none.fl_str_mv |
2024-11-04T04:24:01Z |
dc.date.issued.fl_str_mv |
2024-09-23 |
dc.type.es_PE.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
dc.identifier.citation.es_PE.fl_str_mv |
Estrada-Cañari, R.; Aragón, L.; Pérez-Porras, W.E.; Romero-Avila, R.; Martínez-Vidal, G.; García, K.; Cruz-Luis, J.; & Arbizu-Berrocal, C.I. (2024). Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize. Data in brief, 57(2024), 110951. doi: 10.1016/j.dib.2024.110951 |
dc.identifier.issn.none.fl_str_mv |
2352-3409 |
dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12955/2601 |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1016/j.dib.2024.110951 |
identifier_str_mv |
Estrada-Cañari, R.; Aragón, L.; Pérez-Porras, W.E.; Romero-Avila, R.; Martínez-Vidal, G.; García, K.; Cruz-Luis, J.; & Arbizu-Berrocal, C.I. (2024). Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize. Data in brief, 57(2024), 110951. doi: 10.1016/j.dib.2024.110951 2352-3409 |
url |
https://hdl.handle.net/20.500.12955/2601 https://doi.org/10.1016/j.dib.2024.110951 |
dc.language.iso.es_PE.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.es_PE.fl_str_mv |
urn:issn:2352-3409 |
dc.relation.ispartofseries.es_PE.fl_str_mv |
Data in brief |
dc.rights.es_PE.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.es_PE.fl_str_mv |
https://creativecommons.org/licenses/by-nc/4.0/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc/4.0/ |
dc.format.es_PE.fl_str_mv |
application/pdf |
dc.publisher.es_PE.fl_str_mv |
Elsevier |
dc.publisher.country.es_PE.fl_str_mv |
US |
dc.source.es_PE.fl_str_mv |
Instituto Nacional de Innovación Agraria |
dc.source.none.fl_str_mv |
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Instituto Nacional de Innovación Agraria |
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INIA |
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INIA-Institucional |
dc.source.uri.es_PE.fl_str_mv |
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spelling |
Estrada Cañari, RichardAragón, LilianaPérez Porras, Wendy E.Romero Avila, YolandaMartínez Vidal, GabrielGarcía, KarinaCruz Luis, JuancarlosArbizu Berrocal, Carlos I.2024-11-04T04:24:01Z2024-11-04T04:24:01Z2024-09-23Estrada-Cañari, R.; Aragón, L.; Pérez-Porras, W.E.; Romero-Avila, R.; Martínez-Vidal, G.; García, K.; Cruz-Luis, J.; & Arbizu-Berrocal, C.I. (2024). Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize. Data in brief, 57(2024), 110951. doi: 10.1016/j.dib.2024.1109512352-3409https://hdl.handle.net/20.500.12955/2601https://doi.org/10.1016/j.dib.2024.110951Fusarium verticillioides represents a major phytopathogenic threat to maize crops worldwide. In this study, we present genomic sequence data of a phytopathogen isolated from a maize stem that shows obvious signs of vascular rot. Using rigorous microbiological identification techniques, we correlated the disease symptoms observed in an affected maize region with the presence of the pathogen. Subsequently, the pathogen was cultured in a suitable fungal growth medium and extensive morphological characterization was performed. In addition, a pathogenicity test was carried out in a DCA model with three treatments and seven repetitions. De novo assembly from Illumina Novaseq 60 0 0 sequencing yielded 456 contigs, which together constitute a 42.8 Mb genome assembly with a GC % content of 48.26. Subsequent comparative analyses were performed with other Fusarium genomes available in the NCBI database.application/pdfengElsevierUSurn:issn:2352-3409Data in briefinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc/4.0/Instituto Nacional de Innovación AgrariaRepositorio Institucional - INIAreponame:INIA-Institucionalinstname:Instituto Nacional de Innovación Agrariainstacron:INIAGenome sequencingVascular rotSSR data mininghttps://purl.org/pe-repo/ocde/ford#4.01.06GenomesGenomaPlant diseasesEnfermedades de las plantasData miningMinería de datosDraft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maizeinfo:eu-repo/semantics/articleORIGINALEstrada_et-al_2024_draft_genome_fusarium.pdfEstrada_et-al_2024_draft_genome_fusarium.pdfapplication/pdf1345069https://repositorio.inia.gob.pe/bitstreams/56300ef9-533a-493a-9404-29258dbe8677/download567511f66fc6ec0f3942c2cbf55a97d2MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.inia.gob.pe/bitstreams/b0983982-11d3-477a-a9dd-a2ff19f51177/download8a4605be74aa9ea9d79846c1fba20a33MD52TEXTEstrada_et-al_2024_draft_genome_fusarium.pdf.txtEstrada_et-al_2024_draft_genome_fusarium.pdf.txtExtracted texttext/plain27166https://repositorio.inia.gob.pe/bitstreams/ccab9046-fa36-4e80-a5c3-ce63a3e9b31f/download561fdf4ccfcdab97e7028abc194effb7MD53THUMBNAILEstrada_et-al_2024_draft_genome_fusarium.pdf.jpgEstrada_et-al_2024_draft_genome_fusarium.pdf.jpgGenerated Thumbnailimage/jpeg1774https://repositorio.inia.gob.pe/bitstreams/4fabc247-378e-46d6-977b-fb1c4271fe39/download783ae63fa73eaf928e25c59f19ceaeb1MD5420.500.12955/2601oai:repositorio.inia.gob.pe:20.500.12955/26012025-03-04 16:55:28.726https://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccessopen.accesshttps://repositorio.inia.gob.peRepositorio Institucional INIArepositorio@inia.gob.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 |
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La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).