Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis
Descripción del Articulo
The mitochondrial genome of Pumpo (Bos taurus), a prominent breed contributing to livestock farming, was sequenced using the Illumina HiSeq 2500 platform. Assembly and annotation of the mitochondrial genome were achieved through a multifaceted approach employing bioinformatics tools such as Trim Gal...
| Autores: | , , , , , , , , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2024 |
| Institución: | Instituto Nacional de Innovación Agraria |
| Repositorio: | INIA-Institucional |
| Lenguaje: | inglés |
| OAI Identifier: | oai:repositorio.inia.gob.pe:20.500.12955/2507 |
| Enlace del recurso: | https://hdl.handle.net/20.500.12955/2507 https://doi.org/10.3390/cimb46060320 |
| Nivel de acceso: | acceso abierto |
| Materia: | Bos taurus Mitogenome Phylogenomics Cattle NGS https://purl.org/pe-repo/ocde/ford#4.02.01 Mitochondrial DNA ADN mitocondrial Phylogenetics Filogenética Ganado bovino High-throughput sequencing Secuenciación de alto rendimiento |
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| dc.title.es_PE.fl_str_mv |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| title |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| spellingShingle |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis Estrada Cañari, Richard Bos taurus Mitogenome Phylogenomics Cattle NGS https://purl.org/pe-repo/ocde/ford#4.02.01 Bos taurus Mitochondrial DNA ADN mitocondrial Phylogenetics Filogenética Cattle Ganado bovino High-throughput sequencing Secuenciación de alto rendimiento |
| title_short |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| title_full |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| title_fullStr |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| title_full_unstemmed |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| title_sort |
Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis |
| author |
Estrada Cañari, Richard |
| author_facet |
Estrada Cañari, Richard Figueroa Venegas, Deyanira Antonella Romero Avila, Yolanda Alvarez García, Wuesley Yusmein Rojas Cruz, Diorman Alvarado Chuqui, Wigoberto Maicelo Quintana, Jorge Luis Quilcate Pairazamán, Carlos Enrique Arbizu Berrocal, Carlos Irvin |
| author_role |
author |
| author2 |
Figueroa Venegas, Deyanira Antonella Romero Avila, Yolanda Alvarez García, Wuesley Yusmein Rojas Cruz, Diorman Alvarado Chuqui, Wigoberto Maicelo Quintana, Jorge Luis Quilcate Pairazamán, Carlos Enrique Arbizu Berrocal, Carlos Irvin |
| author2_role |
author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Estrada Cañari, Richard Figueroa Venegas, Deyanira Antonella Romero Avila, Yolanda Alvarez García, Wuesley Yusmein Rojas Cruz, Diorman Alvarado Chuqui, Wigoberto Maicelo Quintana, Jorge Luis Quilcate Pairazamán, Carlos Enrique Arbizu Berrocal, Carlos Irvin |
| dc.subject.es_PE.fl_str_mv |
Bos taurus Mitogenome Phylogenomics Cattle NGS |
| topic |
Bos taurus Mitogenome Phylogenomics Cattle NGS https://purl.org/pe-repo/ocde/ford#4.02.01 Bos taurus Mitochondrial DNA ADN mitocondrial Phylogenetics Filogenética Cattle Ganado bovino High-throughput sequencing Secuenciación de alto rendimiento |
| dc.subject.ocde.es_PE.fl_str_mv |
https://purl.org/pe-repo/ocde/ford#4.02.01 |
| dc.subject.agrovoc.es_PE.fl_str_mv |
Bos taurus Mitochondrial DNA ADN mitocondrial Phylogenetics Filogenética Cattle Ganado bovino High-throughput sequencing Secuenciación de alto rendimiento |
| description |
The mitochondrial genome of Pumpo (Bos taurus), a prominent breed contributing to livestock farming, was sequenced using the Illumina HiSeq 2500 platform. Assembly and annotation of the mitochondrial genome were achieved through a multifaceted approach employing bioinformatics tools such as Trim Galore, SPAdes, and Geseq, followed by meticulous manual inspection. Additionally, analyses covering tRNA secondary structure and codon usage bias were conducted for comprehensive characterization. The 16,341 base pair mitochondrial genome comprises 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. Phylogenetic analysis places Pumpo within a clade predominantly composed of European cattle, reflecting its prevalence in Europe. This comprehensive study underscores the importance of mitochondrial genome analysis in understanding cattle evolution and highlights the potential of genetic improvement programs in livestock farming, thus contributing to enhanced livestock practices. |
| publishDate |
2024 |
| dc.date.accessioned.none.fl_str_mv |
2024-05-29T17:08:23Z |
| dc.date.available.none.fl_str_mv |
2024-05-29T17:08:23Z |
| dc.date.issued.fl_str_mv |
2024-05-28 |
| dc.type.es_PE.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.citation.es_PE.fl_str_mv |
Estrada, R.; Figueroa, D.; Romero, Y.; Alvarez-García, Wuesley Yusmein; Rojas, D; Alvarado, W.; Maicelo, Jorge L.; Quilcate, C., & Arbizu, C. I. (2024). Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis. Current Issues in Molecular Biology, 46(6), 5352-5363. doi: 10.3390/cimb46060320 |
| dc.identifier.issn.none.fl_str_mv |
1467-3045 |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12955/2507 |
| dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.3390/cimb46060320 |
| identifier_str_mv |
Estrada, R.; Figueroa, D.; Romero, Y.; Alvarez-García, Wuesley Yusmein; Rojas, D; Alvarado, W.; Maicelo, Jorge L.; Quilcate, C., & Arbizu, C. I. (2024). Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis. Current Issues in Molecular Biology, 46(6), 5352-5363. doi: 10.3390/cimb46060320 1467-3045 |
| url |
https://hdl.handle.net/20.500.12955/2507 https://doi.org/10.3390/cimb46060320 |
| dc.language.iso.es_PE.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartof.none.fl_str_mv |
urn:issn:1467-3045 |
| dc.relation.ispartofseries.en.fl_str_mv |
Current Issues in Molecular Biology |
| dc.relation.uri.none.fl_str_mv |
https://pgc-snia.inia.gob.pe:8443/jspui/cris/project/pj00287 |
| dc.relation.project.es_PE.fl_str_mv |
Mejoramiento de la disponibilidad de material genético de ganado bovino con alto valor a nivel nacional 7 departamentos (Promeg Nacional) |
| dc.relation.grantno.none.fl_str_mv |
CUI2432072 |
| dc.rights.es_PE.fl_str_mv |
info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by/4.0/ |
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openAccess |
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https://creativecommons.org/licenses/by/4.0/ |
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application/pdf |
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MDPI |
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CH |
| dc.source.es_PE.fl_str_mv |
Instituto Nacional de Innovación Agraria |
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reponame:INIA-Institucional instname:Instituto Nacional de Innovación Agraria instacron:INIA |
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Instituto Nacional de Innovación Agraria |
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INIA |
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INIA |
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INIA-Institucional |
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INIA-Institucional |
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Estrada Cañari, RichardFigueroa Venegas, Deyanira AntonellaRomero Avila, YolandaAlvarez García, Wuesley YusmeinRojas Cruz, DiormanAlvarado Chuqui, WigobertoMaicelo Quintana, Jorge LuisQuilcate Pairazamán, Carlos EnriqueArbizu Berrocal, Carlos Irvin2024-05-29T17:08:23Z2024-05-29T17:08:23Z2024-05-28Estrada, R.; Figueroa, D.; Romero, Y.; Alvarez-García, Wuesley Yusmein; Rojas, D; Alvarado, W.; Maicelo, Jorge L.; Quilcate, C., & Arbizu, C. I. (2024). Complete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysis. Current Issues in Molecular Biology, 46(6), 5352-5363. doi: 10.3390/cimb460603201467-3045https://hdl.handle.net/20.500.12955/2507https://doi.org/10.3390/cimb46060320The mitochondrial genome of Pumpo (Bos taurus), a prominent breed contributing to livestock farming, was sequenced using the Illumina HiSeq 2500 platform. Assembly and annotation of the mitochondrial genome were achieved through a multifaceted approach employing bioinformatics tools such as Trim Galore, SPAdes, and Geseq, followed by meticulous manual inspection. Additionally, analyses covering tRNA secondary structure and codon usage bias were conducted for comprehensive characterization. The 16,341 base pair mitochondrial genome comprises 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. Phylogenetic analysis places Pumpo within a clade predominantly composed of European cattle, reflecting its prevalence in Europe. This comprehensive study underscores the importance of mitochondrial genome analysis in understanding cattle evolution and highlights the potential of genetic improvement programs in livestock farming, thus contributing to enhanced livestock practices.This research was funded by the following research project: “Mejoramiento de la disponibilidad de material genético de ganado bovino con alto valor a nivel nacional 7 departamentos” of the Ministry of Agrarian Development and Irrigation (MIDAGRI) of the Peruvian Government, with grant number CUI 2432072.application/pdfengMDPICHurn:issn:1467-3045Current Issues in Molecular Biologyhttps://pgc-snia.inia.gob.pe:8443/jspui/cris/project/pj00287Mejoramiento de la disponibilidad de material genético de ganado bovino con alto valor a nivel nacional 7 departamentos (Promeg Nacional)CUI2432072info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/Instituto Nacional de Innovación AgrariaRepositorio Institucional - INIAreponame:INIA-Institucionalinstname:Instituto Nacional de Innovación Agrariainstacron:INIABos taurusMitogenomePhylogenomicsCattleNGShttps://purl.org/pe-repo/ocde/ford#4.02.01Bos taurusMitochondrial DNAADN mitocondrialPhylogeneticsFilogenéticaCattleGanado bovinoHigh-throughput sequencingSecuenciación de alto rendimientoComplete mitogenome of “pumpo” (Bos taurus), a top bull from a Peruvian genetic nucleus, and its phylogenetic analysisinfo:eu-repo/semantics/articleORIGINALEstrada_et-al_2024_Bos-taurus_mitogenoma.pdfEstrada_et-al_2024_Bos-taurus_mitogenoma.pdfArticulo (inglés)application/pdf3536548https://repositorio.inia.gob.pe/bitstreams/07a52983-5bf5-4353-a31a-29778f40bb58/downloadd076427b8281012281125ec234a202a5MD53LICENSElicense.txtlicense.txttext/plain; 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Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
