Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva

Descripción del Articulo

InfluenzaAviruses are often present in environmental and clinical samples at concentrations below the limit of detection (LOD) of molecular diagnostics. Here we report an integrated microfluidic preconcentration and nucleic amplification system (μFPNAS) which enables both preconcentration of influen...

Descripción completa

Detalles Bibliográficos
Autores: Kim, Yonghee, Abafogi, Abdurhaman Teyib, Tran, Buu Minh, Kim, Jaewon, Lee, Jinyeop, Chen, Zhenzhong, Bae, Pan Kee, Park, Kyoungsook, Shin, Yong-Beom, Noort, Danny van, Lee, Nae Yoon, Park, Sungsu
Formato: artículo
Fecha de Publicación:2020
Institución:Universidad de Ingeniería y tecnología
Repositorio:UTEC-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.utec.edu.pe:20.500.12815/194
Enlace del recurso:https://hdl.handle.net/20.500.12815/194
https://doi.org/10.3390/mi11020203
Nivel de acceso:acceso abierto
Materia:Microfluidic device
Immunomagnetic separation
Molecular amplification
H1N1
id UTEC_60239f8182f581881eed97a357bbd014
oai_identifier_str oai:repositorio.utec.edu.pe:20.500.12815/194
network_acronym_str UTEC
network_name_str UTEC-Institucional
repository_id_str 4822
spelling Kim, YongheeAbafogi, Abdurhaman TeyibTran, Buu MinhKim, JaewonLee, JinyeopChen, ZhenzhongBae, Pan KeePark, KyoungsookShin, Yong-BeomNoort, Danny vanLee, Nae YoonPark, Sungsu2021-03-16T23:23:01Z2021-03-16T23:23:01Z2020-02-162072-666Xhttps://hdl.handle.net/20.500.12815/194https://doi.org/10.3390/mi11020203MicromachinesInfluenzaAviruses are often present in environmental and clinical samples at concentrations below the limit of detection (LOD) of molecular diagnostics. Here we report an integrated microfluidic preconcentration and nucleic amplification system (μFPNAS) which enables both preconcentration of influenza A virus H1N1 (H1N1) and amplification of its viral RNA, thereby lowering LOD for H1N1. H1N1 virus particles were first magnetically preconcentrated using magnetic nanoparticles conjugated with an antibody specific for the virus. Their isolated RNA was amplified to cDNA through thermocycling in a trapezoidal chamber of the μFPNAS. A detection limit as low as 100 TCID50 (50% tissue culture infective dose) in saliva can be obtained within 2 hours. These results suggest that the LOD of molecular diagnostics for virus can be lowered by systematically combining immunomagnetic separation and reverse transcriptase-polymerase chain reaction (RT-PCR) in one microfluidic device.application/pdfengMDPIinfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/4.0/Repositorio Institucional UTECUniversidad de Ingeniería y Tecnología - UTECreponame:UTEC-Institucionalinstname:Universidad de Ingeniería y tecnologíainstacron:UTECMicrofluidic deviceImmunomagnetic separationMolecular amplificationH1N1Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in salivainfo:eu-repo/semantics/articleORIGINAL10.3390mi11020203.pdf10.3390mi11020203.pdfapplication/pdf2400838http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/1/10.3390mi11020203.pdf6d3dc83c97bc5c366948397059811406MD51open accessTEXT10.3390mi11020203.pdf.txt10.3390mi11020203.pdf.txtExtracted texttext/plain43650http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/5/10.3390mi11020203.pdf.txt0d1b0a25f989611508ad331b2f44beaaMD55open accessTHUMBNAIL10.3390mi11020203.pdf.jpg10.3390mi11020203.pdf.jpgGenerated Thumbnailimage/jpeg1590http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/3/10.3390mi11020203.pdf.jpg7c4038f65cb3c9607a3040c92e9fe21aMD53open access20.500.12815/194oai:repositorio.utec.edu.pe:20.500.12815/1942024-04-10 15:56:12.771open accessRepositorio Institucional UTECrepositorio@utec.edu.pe
dc.title.es_PE.fl_str_mv Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
title Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
spellingShingle Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
Kim, Yonghee
Microfluidic device
Immunomagnetic separation
Molecular amplification
H1N1
title_short Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
title_full Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
title_fullStr Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
title_full_unstemmed Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
title_sort Integrated microfluidic preconcentration and nucleic amplification system for detection of influenza a virus H1N1 in saliva
author Kim, Yonghee
author_facet Kim, Yonghee
Abafogi, Abdurhaman Teyib
Tran, Buu Minh
Kim, Jaewon
Lee, Jinyeop
Chen, Zhenzhong
Bae, Pan Kee
Park, Kyoungsook
Shin, Yong-Beom
Noort, Danny van
Lee, Nae Yoon
Park, Sungsu
author_role author
author2 Abafogi, Abdurhaman Teyib
Tran, Buu Minh
Kim, Jaewon
Lee, Jinyeop
Chen, Zhenzhong
Bae, Pan Kee
Park, Kyoungsook
Shin, Yong-Beom
Noort, Danny van
Lee, Nae Yoon
Park, Sungsu
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Kim, Yonghee
Abafogi, Abdurhaman Teyib
Tran, Buu Minh
Kim, Jaewon
Lee, Jinyeop
Chen, Zhenzhong
Bae, Pan Kee
Park, Kyoungsook
Shin, Yong-Beom
Noort, Danny van
Lee, Nae Yoon
Park, Sungsu
dc.subject.es_PE.fl_str_mv Microfluidic device
Immunomagnetic separation
Molecular amplification
H1N1
topic Microfluidic device
Immunomagnetic separation
Molecular amplification
H1N1
description InfluenzaAviruses are often present in environmental and clinical samples at concentrations below the limit of detection (LOD) of molecular diagnostics. Here we report an integrated microfluidic preconcentration and nucleic amplification system (μFPNAS) which enables both preconcentration of influenza A virus H1N1 (H1N1) and amplification of its viral RNA, thereby lowering LOD for H1N1. H1N1 virus particles were first magnetically preconcentrated using magnetic nanoparticles conjugated with an antibody specific for the virus. Their isolated RNA was amplified to cDNA through thermocycling in a trapezoidal chamber of the μFPNAS. A detection limit as low as 100 TCID50 (50% tissue culture infective dose) in saliva can be obtained within 2 hours. These results suggest that the LOD of molecular diagnostics for virus can be lowered by systematically combining immunomagnetic separation and reverse transcriptase-polymerase chain reaction (RT-PCR) in one microfluidic device.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2021-03-16T23:23:01Z
dc.date.available.none.fl_str_mv 2021-03-16T23:23:01Z
dc.date.issued.fl_str_mv 2020-02-16
dc.type.es_PE.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.issn.es_PE.fl_str_mv 2072-666X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12815/194
dc.identifier.doi.es_PE.fl_str_mv https://doi.org/10.3390/mi11020203
dc.identifier.journal.es_PE.fl_str_mv Micromachines
identifier_str_mv 2072-666X
Micromachines
url https://hdl.handle.net/20.500.12815/194
https://doi.org/10.3390/mi11020203
dc.language.iso.es_PE.fl_str_mv eng
language eng
dc.rights.es_PE.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
dc.format.es_PE.fl_str_mv application/pdf
dc.publisher.es_PE.fl_str_mv MDPI
dc.source.es_PE.fl_str_mv Repositorio Institucional UTEC
Universidad de Ingeniería y Tecnología - UTEC
dc.source.none.fl_str_mv reponame:UTEC-Institucional
instname:Universidad de Ingeniería y tecnología
instacron:UTEC
instname_str Universidad de Ingeniería y tecnología
instacron_str UTEC
institution UTEC
reponame_str UTEC-Institucional
collection UTEC-Institucional
bitstream.url.fl_str_mv http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/1/10.3390mi11020203.pdf
http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/5/10.3390mi11020203.pdf.txt
http://repositorio.utec.edu.pe/bitstream/20.500.12815/194/3/10.3390mi11020203.pdf.jpg
bitstream.checksum.fl_str_mv 6d3dc83c97bc5c366948397059811406
0d1b0a25f989611508ad331b2f44beaa
7c4038f65cb3c9607a3040c92e9fe21a
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional UTEC
repository.mail.fl_str_mv repositorio@utec.edu.pe
_version_ 1843166366657413120
score 13.914502
Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).