Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
Descripción del Articulo
DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspec...
| Autores: | , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2011 |
| Institución: | Universidad Nacional Mayor de San Marcos |
| Repositorio: | Revistas - Universidad Nacional Mayor de San Marcos |
| Lenguaje: | español |
| OAI Identifier: | oai:ojs.csi.unmsm:article/229 |
| Enlace del recurso: | https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229 |
| Nivel de acceso: | acceso abierto |
| Materia: | Systrophia Scolodontidae COI DNA barcodes Neighbour Joining. códigos de barra de ADN |
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Revistas - Universidad Nacional Mayor de San Marcos |
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| dc.title.none.fl_str_mv |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) Divergencia intraespecífica y código de barras de ADN en Systrophia helicycloides (Gastropoda, Scolodontidae) |
| title |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| spellingShingle |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) Romero, Pedro Systrophia Scolodontidae COI DNA barcodes Neighbour Joining. Systrophia Scolodontidae COI códigos de barra de ADN Neighbour Joining. |
| title_short |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| title_full |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| title_fullStr |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| title_full_unstemmed |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| title_sort |
Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae) |
| dc.creator.none.fl_str_mv |
Romero, Pedro Ramírez, Rina |
| author |
Romero, Pedro |
| author_facet |
Romero, Pedro Ramírez, Rina |
| author_role |
author |
| author2 |
Ramírez, Rina |
| author2_role |
author |
| dc.subject.none.fl_str_mv |
Systrophia Scolodontidae COI DNA barcodes Neighbour Joining. Systrophia Scolodontidae COI códigos de barra de ADN Neighbour Joining. |
| topic |
Systrophia Scolodontidae COI DNA barcodes Neighbour Joining. Systrophia Scolodontidae COI códigos de barra de ADN Neighbour Joining. |
| description |
DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspecific divergence in the Amazonian land snail Systrophia helicycloides (Gastropoda, Scolodontidae) and evaluate the use of DNA barcoding in molecular identification of this land snail. Nucleotide sequences were compared with Genbank and BOLD (Barcode of Life Data Systems) databases. We conducted distance analyses using the Neighbour Joining method. Systrophia helicycloides showed two groups of haplotypes and intraspecific genetic distances higher than 4%. We observed an overlap between intraspecific and interspecific distances. The high divergence may be related to rapid mutation rate in the snail mitochondrial genome, to population distribution that influences genetic isolation and differentiation, and to ancestral DNA polymorphisms. COI profiles uploaded in BOLD are the first records of this species and can identify Systrophia helcycloides from other species. These profiles corroborated the high variation in the land snail genome. Therefore, species identification in this group needs a combined analysis of genetic distances, informative sites, and conventional taxonomy. |
| publishDate |
2011 |
| dc.date.none.fl_str_mv |
2011-08-15 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
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https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229 10.15381/rpb.v18i2.229 |
| url |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229 |
| identifier_str_mv |
10.15381/rpb.v18i2.229 |
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spa |
| language |
spa |
| dc.relation.none.fl_str_mv |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229/217 |
| dc.rights.none.fl_str_mv |
Derechos de autor 2011 Pedro Romero, Rina Ramírez https://creativecommons.org/licenses/by-nc-sa/4.0 info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
Derechos de autor 2011 Pedro Romero, Rina Ramírez https://creativecommons.org/licenses/by-nc-sa/4.0 |
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openAccess |
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application/pdf |
| dc.publisher.none.fl_str_mv |
Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
| publisher.none.fl_str_mv |
Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
| dc.source.none.fl_str_mv |
Revista Peruana de Biología; Vol. 18 Núm. 2 (2011); 201 - 208 Revista Peruana de Biología; Vol. 18 No. 2 (2011); 201 - 208 1727-9933 1561-0837 reponame:Revistas - Universidad Nacional Mayor de San Marcos instname:Universidad Nacional Mayor de San Marcos instacron:UNMSM |
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Universidad Nacional Mayor de San Marcos |
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UNMSM |
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UNMSM |
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Revistas - Universidad Nacional Mayor de San Marcos |
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Revistas - Universidad Nacional Mayor de San Marcos |
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1795238305109901312 |
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Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)Divergencia intraespecífica y código de barras de ADN en Systrophia helicycloides (Gastropoda, Scolodontidae)Romero, PedroRamírez, RinaSystrophiaScolodontidaeCOIDNA barcodesNeighbour Joining.SystrophiaScolodontidaeCOIcódigos de barra de ADNNeighbour Joining.DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspecific divergence in the Amazonian land snail Systrophia helicycloides (Gastropoda, Scolodontidae) and evaluate the use of DNA barcoding in molecular identification of this land snail. Nucleotide sequences were compared with Genbank and BOLD (Barcode of Life Data Systems) databases. We conducted distance analyses using the Neighbour Joining method. Systrophia helicycloides showed two groups of haplotypes and intraspecific genetic distances higher than 4%. We observed an overlap between intraspecific and interspecific distances. The high divergence may be related to rapid mutation rate in the snail mitochondrial genome, to population distribution that influences genetic isolation and differentiation, and to ancestral DNA polymorphisms. COI profiles uploaded in BOLD are the first records of this species and can identify Systrophia helcycloides from other species. These profiles corroborated the high variation in the land snail genome. Therefore, species identification in this group needs a combined analysis of genetic distances, informative sites, and conventional taxonomy.El DNA barcoding es un análisis que se basa en la comparación de distancias genéticas para identificar especies utilizando principalmente un segmento del gen Citocromo C Oxidasa I (COI). Los retos para la identificación surgen al estudiar grupos que presentan gran diversidad genética como los moluscos. Por ello, los objetivos de nuestra investigación fueron estimar la divergencia intraespecífica en el molusco terrestre amazónico Systrophia helicycloides (Gastropoda, Scolodontidae) y evaluar la utilización de los códigos de barras de ADN en la identificación molecular de esta especie. Las secuencias de nucleótidos fueron comparadas con las bases de datos Genbank y BOLD (Barcode of Life Data Systems). Se realizó un análisis de distancia genética mediante Neighbour Joining. Systrophia helicycloides presentó dos grupos de haplotipos con distancias genéticas intraespecíficas mayores a 4%. También se observó una superposición entre las distancias intraespecíficas y las interespecíficas. La gran divergencia intraespecífica puede estar relacionada a la rápida variación del genoma mitocondrial, la distribución poblacional de los moluscos la cual permite el aislamiento y diferenciación genética, y la presencia de polimorfismos ancestrales. Los perfiles COI enviados a la base de datos BOLD son los primeros registros para esta especie y permitieron diferenciar a Systrophia helicycloides de otras especies. Estos perfiles corroboran la gran variación que ocurre en el genoma mitocondrial de moluscos terrestres por lo que la asignación de especies en este grupo precisa de la combinación entre los valores de divergencia genética, la evaluación de sitios informativos y los estudios de taxonomía convencional.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2011-08-15info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22910.15381/rpb.v18i2.229Revista Peruana de Biología; Vol. 18 Núm. 2 (2011); 201 - 208Revista Peruana de Biología; Vol. 18 No. 2 (2011); 201 - 2081727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229/217Derechos de autor 2011 Pedro Romero, Rina Ramírezhttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/2292020-05-21T12:44:22Z |
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13.905282 |
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La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).