Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)

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DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspec...

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Detalles Bibliográficos
Autores: Romero, Pedro, Ramírez, Rina
Formato: artículo
Fecha de Publicación:2011
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:ojs.csi.unmsm:article/229
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229
Nivel de acceso:acceso abierto
Materia:Systrophia
Scolodontidae
COI
DNA barcodes
Neighbour Joining.
códigos de barra de ADN
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oai_identifier_str oai:ojs.csi.unmsm:article/229
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network_name_str Revistas - Universidad Nacional Mayor de San Marcos
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dc.title.none.fl_str_mv Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
Divergencia intraespecífica y código de barras de ADN en Systrophia helicycloides (Gastropoda, Scolodontidae)
title Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
spellingShingle Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
Romero, Pedro
Systrophia
Scolodontidae
COI
DNA barcodes
Neighbour Joining.
Systrophia
Scolodontidae
COI
códigos de barra de ADN
Neighbour Joining.
title_short Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
title_full Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
title_fullStr Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
title_full_unstemmed Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
title_sort Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)
dc.creator.none.fl_str_mv Romero, Pedro
Ramírez, Rina
author Romero, Pedro
author_facet Romero, Pedro
Ramírez, Rina
author_role author
author2 Ramírez, Rina
author2_role author
dc.subject.none.fl_str_mv Systrophia
Scolodontidae
COI
DNA barcodes
Neighbour Joining.
Systrophia
Scolodontidae
COI
códigos de barra de ADN
Neighbour Joining.
topic Systrophia
Scolodontidae
COI
DNA barcodes
Neighbour Joining.
Systrophia
Scolodontidae
COI
códigos de barra de ADN
Neighbour Joining.
description DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspecific divergence in the Amazonian land snail Systrophia helicycloides (Gastropoda, Scolodontidae) and evaluate the use of DNA barcoding in molecular identification of this land snail. Nucleotide sequences were compared with Genbank and BOLD (Barcode of Life Data Systems) databases. We conducted distance analyses using the Neighbour Joining method. Systrophia helicycloides showed two groups of haplotypes and intraspecific genetic distances higher than 4%. We observed an overlap between intraspecific and interspecific distances. The high divergence may be related to rapid mutation rate in the snail mitochondrial genome, to population distribution that influences genetic isolation and differentiation, and to ancestral DNA polymorphisms. COI profiles uploaded in BOLD are the first records of this species and can identify Systrophia helcycloides from other species. These profiles corroborated the high variation in the land snail genome. Therefore, species identification in this group needs a combined analysis of genetic distances, informative sites, and conventional taxonomy.
publishDate 2011
dc.date.none.fl_str_mv 2011-08-15
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229
10.15381/rpb.v18i2.229
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229
identifier_str_mv 10.15381/rpb.v18i2.229
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229/217
dc.rights.none.fl_str_mv Derechos de autor 2011 Pedro Romero, Rina Ramírez
https://creativecommons.org/licenses/by-nc-sa/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Derechos de autor 2011 Pedro Romero, Rina Ramírez
https://creativecommons.org/licenses/by-nc-sa/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 18 Núm. 2 (2011); 201 - 208
Revista Peruana de Biología; Vol. 18 No. 2 (2011); 201 - 208
1727-9933
1561-0837
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
instacron:UNMSM
instname_str Universidad Nacional Mayor de San Marcos
instacron_str UNMSM
institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Intraspecific divergence and DNA barcodes in Systrophia helicycloides (Gastropoda, Scolodontidae)Divergencia intraespecífica y código de barras de ADN en Systrophia helicycloides (Gastropoda, Scolodontidae)Romero, PedroRamírez, RinaSystrophiaScolodontidaeCOIDNA barcodesNeighbour Joining.SystrophiaScolodontidaeCOIcódigos de barra de ADNNeighbour Joining.DNA barcoding analysis is based on the comparison of genetic distances to identify species using a segment of Cytochrome C Oxidase I (COI) gene. Species identification through DNA barcoding challenges problems in groups with high genetic diversity as molluscs. Thus, our aim was to estimate intraspecific divergence in the Amazonian land snail Systrophia helicycloides (Gastropoda, Scolodontidae) and evaluate the use of DNA barcoding in molecular identification of this land snail. Nucleotide sequences were compared with Genbank and BOLD (Barcode of Life Data Systems) databases. We conducted distance analyses using the Neighbour Joining method. Systrophia helicycloides showed two groups of haplotypes and intraspecific genetic distances higher than 4%. We observed an overlap between intraspecific and interspecific distances. The high divergence may be related to rapid mutation rate in the snail mitochondrial genome, to population distribution that influences genetic isolation and differentiation, and to ancestral DNA polymorphisms. COI profiles uploaded in BOLD are the first records of this species and can identify Systrophia helcycloides from other species. These profiles corroborated the high variation in the land snail genome. Therefore, species identification in this group needs a combined analysis of genetic distances, informative sites, and conventional taxonomy.El DNA barcoding es un análisis que se basa en la comparación de distancias genéticas para identificar especies utilizando principalmente un segmento del gen Citocromo C Oxidasa I (COI). Los retos para la identificación surgen al estudiar grupos que presentan gran diversidad genética como los moluscos. Por ello, los objetivos de nuestra investigación fueron estimar la divergencia intraespecífica en el molusco terrestre amazónico Systrophia helicycloides (Gastropoda, Scolodontidae) y evaluar la utilización de los códigos de barras de ADN en la identificación molecular de esta especie. Las secuencias de nucleótidos fueron comparadas con las bases de datos Genbank y BOLD (Barcode of Life Data Systems). Se realizó un análisis de distancia genética mediante Neighbour Joining. Systrophia helicycloides presentó dos grupos de haplotipos con distancias genéticas intraespecíficas mayores a 4%. También se observó una superposición entre las distancias intraespecíficas y las interespecíficas. La gran divergencia intraespecífica puede estar relacionada a la rápida variación del genoma mitocondrial, la distribución poblacional de los moluscos la cual permite el aislamiento y diferenciación genética, y la presencia de polimorfismos ancestrales. Los perfiles COI enviados a la base de datos BOLD son los primeros registros para esta especie y permitieron diferenciar a Systrophia helicycloides de otras especies. Estos perfiles corroboran la gran variación que ocurre en el genoma mitocondrial de moluscos terrestres por lo que la asignación de especies en este grupo precisa de la combinación entre los valores de divergencia genética, la evaluación de sitios informativos y los estudios de taxonomía convencional.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2011-08-15info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22910.15381/rpb.v18i2.229Revista Peruana de Biología; Vol. 18 Núm. 2 (2011); 201 - 208Revista Peruana de Biología; Vol. 18 No. 2 (2011); 201 - 2081727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/229/217Derechos de autor 2011 Pedro Romero, Rina Ramírezhttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/2292020-05-21T12:44:22Z
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