The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast

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The article is a preprint, it is important to consider that it is not peer-reviewed
Detalles Bibliográficos
Autores: Saldaña, Carla L., Chura Llanos, Luz S., Estrada Cañari, Richard, Fernandez Huaytalla, Elizabeth, Zirena Vilca, Franz, Guerrero Abad, Juan Carlos, Amasifuen Guerra, Carlos Alberto, Gutierrez Reynoso, Dina Lida, Injante Silva, Pedro Hugo, Arbizu, Carlos I
Formato: preprint
Fecha de Publicación:2024
Institución:Instituto Nacional de Innovación Agraria
Repositorio:INIA-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.inia.gob.pe:20.500.12955/2693
Enlace del recurso:http://hdl.handle.net/20.500.12955/2693
https://doi.org/10.12688/f1000research.155147.1
Nivel de acceso:acceso abierto
Materia:plastome
NGS
coastal zone
phylogenomics
https://purl.org/pe-repo/ocde/ford#4.01.01
https://purl.org/pe-repo/ocde/ford#4.01.04
Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics
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network_name_str INIA-Institucional
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dc.title.none.fl_str_mv The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
title The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
spellingShingle The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
Saldaña, Carla L.
plastome
NGS
coastal zone
phylogenomics
https://purl.org/pe-repo/ocde/ford#4.01.01
https://purl.org/pe-repo/ocde/ford#4.01.04
Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics
title_short The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
title_full The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
title_fullStr The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
title_full_unstemmed The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
title_sort The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
author Saldaña, Carla L.
author_facet Saldaña, Carla L.
Chura Llanos, Luz S.
Estrada Cañari, Richard
Fernandez Huaytalla, Elizabeth
Zirena Vilca, Franz
Guerrero Abad, Juan Carlos
Amasifuen Guerra, Carlos Alberto
Gutierrez Reynoso, Dina Lida
Injante Silva, Pedro Hugo
Arbizu, Carlos I
author_role author
author2 Chura Llanos, Luz S.
Estrada Cañari, Richard
Fernandez Huaytalla, Elizabeth
Zirena Vilca, Franz
Guerrero Abad, Juan Carlos
Amasifuen Guerra, Carlos Alberto
Gutierrez Reynoso, Dina Lida
Injante Silva, Pedro Hugo
Arbizu, Carlos I
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Saldaña, Carla L.
Chura Llanos, Luz S.
Estrada Cañari, Richard
Fernandez Huaytalla, Elizabeth
Zirena Vilca, Franz
Guerrero Abad, Juan Carlos
Amasifuen Guerra, Carlos Alberto
Gutierrez Reynoso, Dina Lida
Injante Silva, Pedro Hugo
Arbizu, Carlos I
dc.subject.none.fl_str_mv plastome
NGS
coastal zone
phylogenomics
topic plastome
NGS
coastal zone
phylogenomics
https://purl.org/pe-repo/ocde/ford#4.01.01
https://purl.org/pe-repo/ocde/ford#4.01.04
Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics
dc.subject.ocde.none.fl_str_mv https://purl.org/pe-repo/ocde/ford#4.01.01
https://purl.org/pe-repo/ocde/ford#4.01.04
dc.subject.agrovoc.none.fl_str_mv Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics
description The article is a preprint, it is important to consider that it is not peer-reviewed
publishDate 2024
dc.date.accessioned.none.fl_str_mv 2025-03-31T05:21:38Z
dc.date.available.none.fl_str_mv 2025-03-31T05:21:38Z
dc.date.issued.fl_str_mv 2024-12-04
dc.type.none.fl_str_mv info:eu-repo/semantics/preprint
format preprint
dc.identifier.citation.none.fl_str_mv Saldaña CL, Chura-Llanos LS, Estrada R et al. The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast [version 1; peer review: awaiting peer review] F1000Research 2024, 13:1478
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12955/2693
dc.identifier.doi.none.fl_str_mv https://doi.org/10.12688/f1000research.155147.1
identifier_str_mv Saldaña CL, Chura-Llanos LS, Estrada R et al. The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast [version 1; peer review: awaiting peer review] F1000Research 2024, 13:1478
url http://hdl.handle.net/20.500.12955/2693
https://doi.org/10.12688/f1000research.155147.1
dc.language.iso.none.fl_str_mv eng
language eng
dc.relation.ispartofseries.none.fl_str_mv F1000Research
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.none.fl_str_mv https://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0/
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv F1000Research
dc.publisher.country.none.fl_str_mv GB
publisher.none.fl_str_mv F1000Research
dc.source.none.fl_str_mv Instituto Nacional de Innovación Agraria
reponame:INIA-Institucional
instname:Instituto Nacional de Innovación Agraria
instacron:INIA
instname_str Instituto Nacional de Innovación Agraria
instacron_str INIA
institution INIA
reponame_str INIA-Institucional
collection INIA-Institucional
dc.source.uri.none.fl_str_mv Repositorio Institucional - INIA
bitstream.url.fl_str_mv https://repositorio.inia.gob.pe/bitstreams/6fdb4b84-abbd-4f2a-8287-359a7e965940/download
https://repositorio.inia.gob.pe/bitstreams/20ecec15-0d87-4373-a331-fb215fcdbf77/download
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repository.name.fl_str_mv Repositorio Institucional INIA
repository.mail.fl_str_mv repositorio@inia.gob.pe
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spelling Saldaña, Carla L.Chura Llanos, Luz S.Estrada Cañari, RichardFernandez Huaytalla, ElizabethZirena Vilca, FranzGuerrero Abad, Juan CarlosAmasifuen Guerra, Carlos AlbertoGutierrez Reynoso, Dina LidaInjante Silva, Pedro HugoArbizu, Carlos I2025-03-31T05:21:38Z2025-03-31T05:21:38Z2024-12-04Saldaña CL, Chura-Llanos LS, Estrada R et al. The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast [version 1; peer review: awaiting peer review] F1000Research 2024, 13:1478http://hdl.handle.net/20.500.12955/2693https://doi.org/10.12688/f1000research.155147.1The article is a preprint, it is important to consider that it is not peer-reviewedOlive (Olea europaea Linaeus 1753) is one of the valuable fruit trees and very important edible oil plant in the world. The chloroplast (cp) genome of an olive tree (Olea europaea) from the southern Peruvian arid coast was obtained for the first time. Genomic DNA of high quality was used to generate librarieswith Illumina Hiseq paired-end methods. The cp genome is 155,886 pb in length and contains a large single-copy region (LSC) of 86,610 pb and a small single copy region (SSC) of 17,790 pb separated by two inverted repeat (IR) regions (25,741bp). The cp genome of olive contains 124 genes that consists of 80 protein-coding genes, 36 tRNA, eight rRNA. Phylogenetic analysis showed this olive tree is sister to O. europaea subsp. maroccana ( Oleeae tribe). This study presents the first overview of the chloroplast genome organization and phylogenetics of O. europaea, offering valuable insights for genetic and evolutionary research in the genus Olea.This research was funded by "Universidad Nacional de Moquegua". C.L.S. and C.I.A. were funded by "Programa Presupuestal No. 068" of the Peruvian Government. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.application/pdfengF1000ResearchGBF1000Researchinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/Instituto Nacional de Innovación Agrariareponame:INIA-Institucionalinstname:Instituto Nacional de Innovación Agrariainstacron:INIARepositorio Institucional - INIAplastomeNGScoastal zonephylogenomicshttps://purl.org/pe-repo/ocde/ford#4.01.01https://purl.org/pe-repo/ocde/ford#4.01.04Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; GeneticsThe complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coastinfo:eu-repo/semantics/preprintLICENSElicense.txtlicense.txttext/plain; charset=utf-81792https://repositorio.inia.gob.pe/bitstreams/6fdb4b84-abbd-4f2a-8287-359a7e965940/downloada1dff3722e05e29dac20fa1a97a12ccfMD52ORIGINALSaldaña_et-al_2024_chloroplast olive.pdfSaldaña_et-al_2024_chloroplast olive.pdfapplication/pdf1757626https://repositorio.inia.gob.pe/bitstreams/20ecec15-0d87-4373-a331-fb215fcdbf77/download12c472d33c89490a03148c65299e765dMD5320.500.12955/2693oai:repositorio.inia.gob.pe:20.500.12955/26932025-03-31 00:21:38.892https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessopen.accesshttps://repositorio.inia.gob.peRepositorio Institucional INIArepositorio@inia.gob.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
score 13.7211075
The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
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