A genomotaxonomy view of the bradyrhizobium genus
Descripción del Articulo
Whole genome analysis of the Bradyrhizobium genus using average nucleotide identity (ANI) and phylogenomics showed the genus to be essentially monophyletic with seven robust groups within this taxon that includes nitrogen-fixing nodule forming bacteria as well as free living strains. Despite the wid...
Autores: | , |
---|---|
Formato: | artículo |
Fecha de Publicación: | 2019 |
Institución: | Consejo Nacional de Ciencia Tecnología e Innovación |
Repositorio: | CONCYTEC-Institucional |
Lenguaje: | inglés |
OAI Identifier: | oai:repositorio.concytec.gob.pe:20.500.12390/2747 |
Enlace del recurso: | https://hdl.handle.net/20.500.12390/2747 https://doi.org/10.3389/fmicb.2019.01334 |
Nivel de acceso: | acceso abierto |
Materia: | Rhodopseudomonas Legume symbionts Nitrogen-fixation Nodulation Phylogenomics http://purl.org/pe-repo/ocde/ford#1.06.07 |
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dc.title.none.fl_str_mv |
A genomotaxonomy view of the bradyrhizobium genus |
title |
A genomotaxonomy view of the bradyrhizobium genus |
spellingShingle |
A genomotaxonomy view of the bradyrhizobium genus Ormeño-Orrillo E. Rhodopseudomonas Legume symbionts Nitrogen-fixation Nodulation Phylogenomics http://purl.org/pe-repo/ocde/ford#1.06.07 |
title_short |
A genomotaxonomy view of the bradyrhizobium genus |
title_full |
A genomotaxonomy view of the bradyrhizobium genus |
title_fullStr |
A genomotaxonomy view of the bradyrhizobium genus |
title_full_unstemmed |
A genomotaxonomy view of the bradyrhizobium genus |
title_sort |
A genomotaxonomy view of the bradyrhizobium genus |
author |
Ormeño-Orrillo E. |
author_facet |
Ormeño-Orrillo E. Martínez-Romero E. |
author_role |
author |
author2 |
Martínez-Romero E. |
author2_role |
author |
dc.contributor.author.fl_str_mv |
Ormeño-Orrillo E. Martínez-Romero E. |
dc.subject.none.fl_str_mv |
Rhodopseudomonas |
topic |
Rhodopseudomonas Legume symbionts Nitrogen-fixation Nodulation Phylogenomics http://purl.org/pe-repo/ocde/ford#1.06.07 |
dc.subject.es_PE.fl_str_mv |
Legume symbionts Nitrogen-fixation Nodulation Phylogenomics |
dc.subject.ocde.none.fl_str_mv |
http://purl.org/pe-repo/ocde/ford#1.06.07 |
description |
Whole genome analysis of the Bradyrhizobium genus using average nucleotide identity (ANI) and phylogenomics showed the genus to be essentially monophyletic with seven robust groups within this taxon that includes nitrogen-fixing nodule forming bacteria as well as free living strains. Despite the wide genetic diversity of these bacteria no indication was found to suggest that the Bradyrhizobium genus have to split in different taxa. Bradyrhizobia have larger genomes than other genera of the Bradyrhizobiaceae family, probably reflecting their metabolic diversity and different lifestyles. Few plasmids in the sequenced strains were revealed from rep gene analysis and a relatively low proportion of the genome is devoted to mobile genetic elements. Sequence diversity of recA and glnII gene metadata was used to theoretically estimate the number of existing species and to predict how many would exist. There may be many more species than those presently described with predictions of around 800 species in nature. Different arguments are presented suggesting that nodulation might have arose in the ancestral genus Bradyrhizobium. Copyright © 2019 Ormeño-Orrillo and Martínez-Romero. |
publishDate |
2019 |
dc.date.accessioned.none.fl_str_mv |
2024-05-30T23:13:38Z |
dc.date.available.none.fl_str_mv |
2024-05-30T23:13:38Z |
dc.date.issued.fl_str_mv |
2019 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12390/2747 |
dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.3389/fmicb.2019.01334 |
dc.identifier.scopus.none.fl_str_mv |
2-s2.0-85069171775 |
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https://hdl.handle.net/20.500.12390/2747 https://doi.org/10.3389/fmicb.2019.01334 |
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2-s2.0-85069171775 |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.none.fl_str_mv |
Frontiers in Microbiology |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
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Frontiers Media S.A. |
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Frontiers Media S.A. |
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Publicationrp06531600rp06372600Ormeño-Orrillo E.Martínez-Romero E.2024-05-30T23:13:38Z2024-05-30T23:13:38Z2019https://hdl.handle.net/20.500.12390/2747https://doi.org/10.3389/fmicb.2019.013342-s2.0-85069171775Whole genome analysis of the Bradyrhizobium genus using average nucleotide identity (ANI) and phylogenomics showed the genus to be essentially monophyletic with seven robust groups within this taxon that includes nitrogen-fixing nodule forming bacteria as well as free living strains. Despite the wide genetic diversity of these bacteria no indication was found to suggest that the Bradyrhizobium genus have to split in different taxa. Bradyrhizobia have larger genomes than other genera of the Bradyrhizobiaceae family, probably reflecting their metabolic diversity and different lifestyles. Few plasmids in the sequenced strains were revealed from rep gene analysis and a relatively low proportion of the genome is devoted to mobile genetic elements. Sequence diversity of recA and glnII gene metadata was used to theoretically estimate the number of existing species and to predict how many would exist. There may be many more species than those presently described with predictions of around 800 species in nature. Different arguments are presented suggesting that nodulation might have arose in the ancestral genus Bradyrhizobium. Copyright © 2019 Ormeño-Orrillo and Martínez-Romero.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengFrontiers Media S.A.Frontiers in Microbiologyinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/4.0/RhodopseudomonasLegume symbionts-1Nitrogen-fixation-1Nodulation-1Phylogenomics-1http://purl.org/pe-repo/ocde/ford#1.06.07-1A genomotaxonomy view of the bradyrhizobium genusinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTECORIGINALfmicb-10-01334.pdffmicb-10-01334.pdfapplication/pdf1529229https://repositorio.concytec.gob.pe/bitstreams/ce0abd4e-9288-4b9b-a897-2e289d1e7b8e/download4d7582fcbecc9463a1c4067c82e6463aMD51TEXTfmicb-10-01334.pdf.txtfmicb-10-01334.pdf.txtExtracted texttext/plain63461https://repositorio.concytec.gob.pe/bitstreams/6217e4f6-4564-4988-9699-fe512e2b4c7d/download3bf5b1089ea26f46e8ff1b39800cf3a4MD52THUMBNAILfmicb-10-01334.pdf.jpgfmicb-10-01334.pdf.jpgGenerated Thumbnailimage/jpeg5197https://repositorio.concytec.gob.pe/bitstreams/419d7310-e863-4775-b80b-35008b740fea/download1d33ebbc89438a9919ece3ed5dfe53a7MD5320.500.12390/2747oai:repositorio.concytec.gob.pe:20.500.12390/27472025-01-14 22:00:43.64https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessopen accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="9f41e20d-6e82-4fa0-8234-2782cb3382d4"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>A genomotaxonomy view of the bradyrhizobium genus</Title> <PublishedIn> <Publication> <Title>Frontiers in Microbiology</Title> </Publication> </PublishedIn> <PublicationDate>2019</PublicationDate> <DOI>https://doi.org/10.3389/fmicb.2019.01334</DOI> <SCP-Number>2-s2.0-85069171775</SCP-Number> <Authors> <Author> <DisplayName>Ormeño-Orrillo E.</DisplayName> <Person id="rp06531" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Martínez-Romero E.</DisplayName> <Person id="rp06372" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>Frontiers Media S.A.</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by-nc-nd/4.0/</License> <Keyword>Rhodopseudomonas</Keyword> <Keyword>Legume symbionts</Keyword> <Keyword>Nitrogen-fixation</Keyword> <Keyword>Nodulation</Keyword> <Keyword>Phylogenomics</Keyword> <Abstract>Whole genome analysis of the Bradyrhizobium genus using average nucleotide identity (ANI) and phylogenomics showed the genus to be essentially monophyletic with seven robust groups within this taxon that includes nitrogen-fixing nodule forming bacteria as well as free living strains. Despite the wide genetic diversity of these bacteria no indication was found to suggest that the Bradyrhizobium genus have to split in different taxa. Bradyrhizobia have larger genomes than other genera of the Bradyrhizobiaceae family, probably reflecting their metabolic diversity and different lifestyles. Few plasmids in the sequenced strains were revealed from rep gene analysis and a relatively low proportion of the genome is devoted to mobile genetic elements. Sequence diversity of recA and glnII gene metadata was used to theoretically estimate the number of existing species and to predict how many would exist. There may be many more species than those presently described with predictions of around 800 species in nature. Different arguments are presented suggesting that nodulation might have arose in the ancestral genus Bradyrhizobium. Copyright © 2019 Ormeño-Orrillo and Martínez-Romero.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1 |
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