Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations

Descripción del Articulo

This research was supported by project N? 177-2015 FONDECYT (The National Fund for Scientific and Technological Development) and Universidad Nacional Agraria La Molina, Peru.
Detalles Bibliográficos
Autores: Quispe-Apaza C., Mansilla-Samaniego R., Espejo-Joya R., Bernacchia G., Yabar-Larios M., López-Bonilla C.
Formato: artículo
Fecha de Publicación:2021
Institución:Consejo Nacional de Ciencia Tecnología e Innovación
Repositorio:CONCYTEC-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.concytec.gob.pe:20.500.12390/3056
Enlace del recurso:https://hdl.handle.net/20.500.12390/3056
https://doi.org/10.5423/PPJ.OA.10.2020.0192
Nivel de acceso:acceso abierto
Materia:Peru
Coffee leaf rust
Demographic history
Fungus
Genetic variability
https://purl.org/pe-repo/ocde/ford#2.03.04
id CONC_6047e0172db9d86d8be8ce77ca7872d2
oai_identifier_str oai:repositorio.concytec.gob.pe:20.500.12390/3056
network_acronym_str CONC
network_name_str CONCYTEC-Institucional
repository_id_str 4689
dc.title.none.fl_str_mv Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
title Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
spellingShingle Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
Quispe-Apaza C.
Peru
Coffee leaf rust
Demographic history
Fungus
Genetic variability
https://purl.org/pe-repo/ocde/ford#2.03.04
title_short Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
title_full Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
title_fullStr Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
title_full_unstemmed Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
title_sort Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
author Quispe-Apaza C.
author_facet Quispe-Apaza C.
Mansilla-Samaniego R.
Espejo-Joya R.
Bernacchia G.
Yabar-Larios M.
López-Bonilla C.
author_role author
author2 Mansilla-Samaniego R.
Espejo-Joya R.
Bernacchia G.
Yabar-Larios M.
López-Bonilla C.
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Quispe-Apaza C.
Mansilla-Samaniego R.
Espejo-Joya R.
Bernacchia G.
Yabar-Larios M.
López-Bonilla C.
dc.subject.none.fl_str_mv Peru
topic Peru
Coffee leaf rust
Demographic history
Fungus
Genetic variability
https://purl.org/pe-repo/ocde/ford#2.03.04
dc.subject.es_PE.fl_str_mv Coffee leaf rust
Demographic history
Fungus
Genetic variability
dc.subject.ocde.none.fl_str_mv https://purl.org/pe-repo/ocde/ford#2.03.04
description This research was supported by project N? 177-2015 FONDECYT (The National Fund for Scientific and Technological Development) and Universidad Nacional Agraria La Molina, Peru.
publishDate 2021
dc.date.accessioned.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.available.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.issued.fl_str_mv 2021
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12390/3056
dc.identifier.doi.none.fl_str_mv https://doi.org/10.5423/PPJ.OA.10.2020.0192
dc.identifier.scopus.none.fl_str_mv 2-s2.0-85108578424
url https://hdl.handle.net/20.500.12390/3056
https://doi.org/10.5423/PPJ.OA.10.2020.0192
identifier_str_mv 2-s2.0-85108578424
dc.language.iso.none.fl_str_mv eng
language eng
dc.relation.ispartof.none.fl_str_mv Plant Pathology Journal
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.none.fl_str_mv https://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0/
dc.publisher.none.fl_str_mv Korean Society of Plant Pathology
publisher.none.fl_str_mv Korean Society of Plant Pathology
dc.source.none.fl_str_mv reponame:CONCYTEC-Institucional
instname:Consejo Nacional de Ciencia Tecnología e Innovación
instacron:CONCYTEC
instname_str Consejo Nacional de Ciencia Tecnología e Innovación
instacron_str CONCYTEC
institution CONCYTEC
reponame_str CONCYTEC-Institucional
collection CONCYTEC-Institucional
repository.name.fl_str_mv Repositorio Institucional CONCYTEC
repository.mail.fl_str_mv repositorio@concytec.gob.pe
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spelling Publicationrp08790600rp08789600rp08785600rp08787600rp08788600rp08786600Quispe-Apaza C.Mansilla-Samaniego R.Espejo-Joya R.Bernacchia G.Yabar-Larios M.López-Bonilla C.2024-05-30T23:13:38Z2024-05-30T23:13:38Z2021https://hdl.handle.net/20.500.12390/3056https://doi.org/10.5423/PPJ.OA.10.2020.01922-s2.0-85108578424This research was supported by project N? 177-2015 FONDECYT (The National Fund for Scientific and Technological Development) and Universidad Nacional Agraria La Molina, Peru.Population genetic studies of Hemileia vastatrix have been conducted in order to describe the evolutionary dynamics of the pathogen and the disease epidemiology as consequence of changes in disease management and host distribution occurred in Peru after the 2013 epidemic. These analyses were performed by sequencing the internal transcribed spacers of the nuclear ribosomal DNA (rDNA-ITS) of H. vastatrix collected from two coffee growing areas in 2014 and 2018. H. vastatrix population showed high haplotype diversity (Hd = 0.9373 ± 0.0115) with a low nucleotide diversity (π = 0.00322 ± 0.00018). Likewise, AMOVA indicated that fungus population has behaved as a large population without structuring by geographical origin and sampling years (FST = 0.00180, P = 0.20053 and FST = 0.00241, P = 0.19693, respectively). Additionally, the haplotype network based on intraspecific phylogenetic analysis of H. vastatrix using Peruvian and NCBI sequences revealed that Peruvian ancestral haplotypes, which were maintained in time and space, would correspond to the reported sequences of the races II and XXII. This re-sult suggests that no substantial changes have occurred through time in Peruvian Hemileia vastatrix population. © 2021, Korean Society of Plant Pathology. All rights reserved.Fondo Nacional de Desarrollo Científico y Tecnológico - FondecytengKorean Society of Plant PathologyPlant Pathology Journalinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/PeruCoffee leaf rust-1Demographic history-1Fungus-1Genetic variability-1https://purl.org/pe-repo/ocde/ford#2.03.04-1Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantationsinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#20.500.12390/3056oai:repositorio.concytec.gob.pe:20.500.12390/30562024-05-30 15:26:18.54https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="437f32fe-4fc9-4b1a-b983-5c3c1b5eaa4c"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations</Title> <PublishedIn> <Publication> <Title>Plant Pathology Journal</Title> </Publication> </PublishedIn> <PublicationDate>2021</PublicationDate> <DOI>https://doi.org/10.5423/PPJ.OA.10.2020.0192</DOI> <SCP-Number>2-s2.0-85108578424</SCP-Number> <Authors> <Author> <DisplayName>Quispe-Apaza C.</DisplayName> <Person id="rp08790" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Mansilla-Samaniego R.</DisplayName> <Person id="rp08789" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Espejo-Joya R.</DisplayName> <Person id="rp08785" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Bernacchia G.</DisplayName> <Person id="rp08787" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Yabar-Larios M.</DisplayName> <Person id="rp08788" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>López-Bonilla C.</DisplayName> <Person id="rp08786" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>Korean Society of Plant Pathology</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by/4.0/</License> <Keyword>Peru</Keyword> <Keyword>Coffee leaf rust</Keyword> <Keyword>Demographic history</Keyword> <Keyword>Fungus</Keyword> <Keyword>Genetic variability</Keyword> <Abstract>Population genetic studies of Hemileia vastatrix have been conducted in order to describe the evolutionary dynamics of the pathogen and the disease epidemiology as consequence of changes in disease management and host distribution occurred in Peru after the 2013 epidemic. These analyses were performed by sequencing the internal transcribed spacers of the nuclear ribosomal DNA (rDNA-ITS) of H. vastatrix collected from two coffee growing areas in 2014 and 2018. H. vastatrix population showed high haplotype diversity (Hd = 0.9373 ± 0.0115) with a low nucleotide diversity (π = 0.00322 ± 0.00018). Likewise, AMOVA indicated that fungus population has behaved as a large population without structuring by geographical origin and sampling years (FST = 0.00180, P = 0.20053 and FST = 0.00241, P = 0.19693, respectively). Additionally, the haplotype network based on intraspecific phylogenetic analysis of H. vastatrix using Peruvian and NCBI sequences revealed that Peruvian ancestral haplotypes, which were maintained in time and space, would correspond to the reported sequences of the races II and XXII. This re-sult suggests that no substantial changes have occurred through time in Peruvian Hemileia vastatrix population. © 2021, Korean Society of Plant Pathology. All rights reserved.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1
score 13.439101
Spatial and temporal genetic diversity and population structure of hemileia vastatrix from peruvian coffee plantations
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