Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip

Descripción del Articulo

The aim of this study was to discover alpaca SNPs by genotyping forty alpaca DNA samples using the BovineHD Genotyping Beadchip. Data analysis was performed with GenomeStudio, Illumina, software. Because different filters and thresholds are reported in the literature we investigated the effects of n...

Descripción completa

Detalles Bibliográficos
Autores: More, M, Gutierrez, G, Rothschild, M, Bertolini, F, de Leon, FAP
Formato: artículo
Fecha de Publicación:2019
Institución:Consejo Nacional de Ciencia Tecnología e Innovación
Repositorio:CONCYTEC-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.concytec.gob.pe:20.500.12390/1064
Enlace del recurso:https://hdl.handle.net/20.500.12390/1064
https://doi.org/10.3389/fgene.2019.00361
Nivel de acceso:acceso abierto
Materia:Genética animal
https://purl.org/pe-repo/ocde/ford#1.06.07
id CONC_152299d0e5db066a857de5ee9f6b0e7b
oai_identifier_str oai:repositorio.concytec.gob.pe:20.500.12390/1064
network_acronym_str CONC
network_name_str CONCYTEC-Institucional
repository_id_str 4689
spelling Publicationrp00607500rp02169500rp03023600rp03024600rp02949500More, MGutierrez, GRothschild, MBertolini, Fde Leon, FAP2024-05-30T23:13:38Z2024-05-30T23:13:38Z2019https://hdl.handle.net/20.500.12390/1064https://doi.org/10.3389/fgene.2019.00361465677200001The aim of this study was to discover alpaca SNPs by genotyping forty alpaca DNA samples using the BovineHD Genotyping Beadchip. Data analysis was performed with GenomeStudio, Illumina, software. Because different filters and thresholds are reported in the literature we investigated the effects of no-call threshold and call frequency in identifying positive SNPs. Unique SNPs identified in both reference genomes were kept and mapped on the Vicugna_pacos 2.0.2 genome.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengFrontiers MediaFrontiers in Geneticsinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/4.0/Genética animalhttps://purl.org/pe-repo/ocde/ford#1.06.07-1Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchipinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC20.500.12390/1064oai:repositorio.concytec.gob.pe:20.500.12390/10642024-05-30 16:00:51.895https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="de167ea0-5c13-47c2-8d02-7f02c6c1f9e4"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip</Title> <PublishedIn> <Publication> <Title>Frontiers in Genetics</Title> </Publication> </PublishedIn> <PublicationDate>2019</PublicationDate> <DOI>https://doi.org/10.3389/fgene.2019.00361</DOI> <ISI-Number>465677200001</ISI-Number> <Authors> <Author> <DisplayName>More, M</DisplayName> <Person id="rp00607" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Gutierrez, G</DisplayName> <Person id="rp02169" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Rothschild, M</DisplayName> <Person id="rp03023" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Bertolini, F</DisplayName> <Person id="rp03024" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>de Leon, FAP</DisplayName> <Person id="rp02949" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>Frontiers Media</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by-nc-nd/4.0/</License> <Keyword>Genética animal</Keyword> <Abstract>The aim of this study was to discover alpaca SNPs by genotyping forty alpaca DNA samples using the BovineHD Genotyping Beadchip. Data analysis was performed with GenomeStudio, Illumina, software. Because different filters and thresholds are reported in the literature we investigated the effects of no-call threshold and call frequency in identifying positive SNPs. Unique SNPs identified in both reference genomes were kept and mapped on the Vicugna_pacos 2.0.2 genome.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1
dc.title.none.fl_str_mv Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
title Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
spellingShingle Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
More, M
Genética animal
https://purl.org/pe-repo/ocde/ford#1.06.07
title_short Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
title_full Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
title_fullStr Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
title_full_unstemmed Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
title_sort Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
author More, M
author_facet More, M
Gutierrez, G
Rothschild, M
Bertolini, F
de Leon, FAP
author_role author
author2 Gutierrez, G
Rothschild, M
Bertolini, F
de Leon, FAP
author2_role author
author
author
author
dc.contributor.author.fl_str_mv More, M
Gutierrez, G
Rothschild, M
Bertolini, F
de Leon, FAP
dc.subject.none.fl_str_mv Genética animal
topic Genética animal
https://purl.org/pe-repo/ocde/ford#1.06.07
dc.subject.ocde.none.fl_str_mv https://purl.org/pe-repo/ocde/ford#1.06.07
description The aim of this study was to discover alpaca SNPs by genotyping forty alpaca DNA samples using the BovineHD Genotyping Beadchip. Data analysis was performed with GenomeStudio, Illumina, software. Because different filters and thresholds are reported in the literature we investigated the effects of no-call threshold and call frequency in identifying positive SNPs. Unique SNPs identified in both reference genomes were kept and mapped on the Vicugna_pacos 2.0.2 genome.
publishDate 2019
dc.date.accessioned.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.available.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.issued.fl_str_mv 2019
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12390/1064
dc.identifier.doi.none.fl_str_mv https://doi.org/10.3389/fgene.2019.00361
dc.identifier.isi.none.fl_str_mv 465677200001
url https://hdl.handle.net/20.500.12390/1064
https://doi.org/10.3389/fgene.2019.00361
identifier_str_mv 465677200001
dc.language.iso.none.fl_str_mv eng
language eng
dc.relation.ispartof.none.fl_str_mv Frontiers in Genetics
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.none.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
dc.source.none.fl_str_mv reponame:CONCYTEC-Institucional
instname:Consejo Nacional de Ciencia Tecnología e Innovación
instacron:CONCYTEC
instname_str Consejo Nacional de Ciencia Tecnología e Innovación
instacron_str CONCYTEC
institution CONCYTEC
reponame_str CONCYTEC-Institucional
collection CONCYTEC-Institucional
repository.name.fl_str_mv Repositorio Institucional CONCYTEC
repository.mail.fl_str_mv repositorio@concytec.gob.pe
_version_ 1844883039618859008
score 13.889224
Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).

Ejemplares Similares