Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru

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This paper analyzes the genetic diversity of 79 accessions of native potato varieties (Solanum spp.) using 18 microsatellite markers. A random sample from Ayacucho, Cajamarca, Cusco, Huancavelica and Puno from "chacras" of farmers who collaborated with the "In situ conservation of nat...

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Detalles Bibliográficos
Autores: Soto, Julián, Medina, Tulio, Aquino, Yeny, Estrada, Rolando
Formato: artículo
Fecha de Publicación:2013
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:ojs.csi.unmsm:article/5216
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/5216
Nivel de acceso:acceso abierto
Materia:In situ conservation
genetic diversity
native potato
microsatellites
SSR
Conservación in situ
Diversidad genética
papa nativa
microsatélites
SSR.
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oai_identifier_str oai:ojs.csi.unmsm:article/5216
network_acronym_str REVUNMSM
network_name_str Revistas - Universidad Nacional Mayor de San Marcos
repository_id_str
dc.title.none.fl_str_mv Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
Diversidad genética de papas nativas (Solanumspp.) conservadas en cultivares nativos del Perú
title Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
spellingShingle Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
Soto, Julián
In situ conservation
genetic diversity
native potato
microsatellites
SSR
Conservación in situ
Diversidad genética
papa nativa
microsatélites
SSR.
title_short Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
title_full Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
title_fullStr Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
title_full_unstemmed Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
title_sort Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from Peru
dc.creator.none.fl_str_mv Soto, Julián
Medina, Tulio
Aquino, Yeny
Estrada, Rolando
author Soto, Julián
author_facet Soto, Julián
Medina, Tulio
Aquino, Yeny
Estrada, Rolando
author_role author
author2 Medina, Tulio
Aquino, Yeny
Estrada, Rolando
author2_role author
author
author
dc.subject.none.fl_str_mv In situ conservation
genetic diversity
native potato
microsatellites
SSR
Conservación in situ
Diversidad genética
papa nativa
microsatélites
SSR.
topic In situ conservation
genetic diversity
native potato
microsatellites
SSR
Conservación in situ
Diversidad genética
papa nativa
microsatélites
SSR.
description This paper analyzes the genetic diversity of 79 accessions of native potato varieties (Solanum spp.) using 18 microsatellite markers. A random sample from Ayacucho, Cajamarca, Cusco, Huancavelica and Puno from "chacras" of farmers who collaborated with the "In situ conservation of native crops and wild relatives" were used. 17 markers amplified one single polymorphic locus, the mean number of alleles per locus was 8.79. The mean similarity was 0.62 and clustering indexes varied between 0.41 and 0.98. 19 loci showed a total of 166 alleles. Cuzco had the highest number of alleles (130 alleles). Of the 166 characterized alleles, 72 alleles (43.37%) were common or shared with 5 sampling sites. Puno had the highest number of exclusive alleles (8 alleles). The 42 varieties of S. tuberosum subsp. andigena showed a mean diversity of 0.74 and 18 varieties of S. x chauchaan average diversity of 0.70. Polymorphism (PIC = 0.55 to 0.85) and genetic diversity indices show that microsatellites evaluated can identify high levels of genetic diversity, but also are not sufficient to discriminate differentiated by origin or species groups. Our analyzes indicate a high genetic diversity and are consistent with inventories and morphological characterizations performed in situ, we can also conclude that there would be a common pool of genes would be found widely distributed among the regions studied.
publishDate 2013
dc.date.none.fl_str_mv 2013-12-30
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/5216
10.15381/rpb.v20i3.5216
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/5216
identifier_str_mv 10.15381/rpb.v20i3.5216
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/5216/4381
dc.rights.none.fl_str_mv Derechos de autor 2013 Julián Soto, Tulio Medina, Yeny Aquino, Rolando Estrada
https://creativecommons.org/licenses/by-nc-sa/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Derechos de autor 2013 Julián Soto, Tulio Medina, Yeny Aquino, Rolando Estrada
https://creativecommons.org/licenses/by-nc-sa/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 20 Núm. 3 (2013); 215 - 222
Revista Peruana de Biología; Vol. 20 No. 3 (2013); 215 - 222
1727-9933
1561-0837
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
instacron:UNMSM
instname_str Universidad Nacional Mayor de San Marcos
instacron_str UNMSM
institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Genetic diversity of native potatoes (Solanumspp.) conserved in landraces from PeruDiversidad genética de papas nativas (Solanumspp.) conservadas en cultivares nativos del PerúSoto, JuliánMedina, TulioAquino, YenyEstrada, RolandoIn situ conservationgenetic diversitynative potatomicrosatellitesSSRConservación in situDiversidad genéticapapa nativamicrosatélitesSSR.This paper analyzes the genetic diversity of 79 accessions of native potato varieties (Solanum spp.) using 18 microsatellite markers. A random sample from Ayacucho, Cajamarca, Cusco, Huancavelica and Puno from "chacras" of farmers who collaborated with the "In situ conservation of native crops and wild relatives" were used. 17 markers amplified one single polymorphic locus, the mean number of alleles per locus was 8.79. The mean similarity was 0.62 and clustering indexes varied between 0.41 and 0.98. 19 loci showed a total of 166 alleles. Cuzco had the highest number of alleles (130 alleles). Of the 166 characterized alleles, 72 alleles (43.37%) were common or shared with 5 sampling sites. Puno had the highest number of exclusive alleles (8 alleles). The 42 varieties of S. tuberosum subsp. andigena showed a mean diversity of 0.74 and 18 varieties of S. x chauchaan average diversity of 0.70. Polymorphism (PIC = 0.55 to 0.85) and genetic diversity indices show that microsatellites evaluated can identify high levels of genetic diversity, but also are not sufficient to discriminate differentiated by origin or species groups. Our analyzes indicate a high genetic diversity and are consistent with inventories and morphological characterizations performed in situ, we can also conclude that there would be a common pool of genes would be found widely distributed among the regions studied.El presente trabajo analiza el grado de diversidad genética utilizando 18 marcadores microsatélites, de una muestra aleatoria de 79 variedades nominales de papa nativa (Solanumspp.) procedentes de cinco regiones políticas del Perú (Ayacucho, Cajamarca, Cusco, Huancavelica y Puno), cultivadas en “chacras” de agricultores que colaboraron con el proyecto “Conservación in situde los cultivos nativos y sus parientes silvestres”. De los 18 marcadores, 17 amplificaron un solo locus polimórfico, siendo el promedio de alelos por locus de 8.79. Se obtuvo una similitud media de 0.62 y rangos de agrupamiento que varíaron desde 0.41 a 0.98. Para los 19 loci registrados se obtuvo un total de 166 alelos. La región de Cuzco presentó el mayor número de alelos (130 alelos). De los 166 alelos caracterizados, 72 alelos (43.37%) fueron comunes o compartidos con las 5 regiones de colecta. La región de Puno presento el mayor numero de alelos exclusivos (8 alelos). Las 42 variedades nominales de S. tuberosumsubsp. andigenatuvieron una diversidad promedio de 0.74 y las 18 variedades nominales de S. x chauchauna diversidad promedio de 0.70. Los valores de polimorfismo (PIC = 0.55 – 0.85) y los índices de diversidad genética obtenidos indicarían que los microsatélites evaluados logran identificar altos niveles de diversidad genética, pero a la vez no son suficientes para discriminar grupos diferenciados por procedencia o especies. Nuestros análisis indican que existe un alto grado de diversidad genética y corroboran los resultados obtenidos de los inventarios y caracterizaciones morfológicas realizadas in situ; también podemos concluir que existiría un pool de genes común que se encontrarían ampliamente distribuidos entre las regiones estudiadas.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2013-12-30info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/521610.15381/rpb.v20i3.5216Revista Peruana de Biología; Vol. 20 Núm. 3 (2013); 215 - 222Revista Peruana de Biología; Vol. 20 No. 3 (2013); 215 - 2221727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/5216/4381Derechos de autor 2013 Julián Soto, Tulio Medina, Yeny Aquino, Rolando Estradahttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/52162020-05-20T19:43:38Z
score 13.926056
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