Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils

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The aim of this study was to evaluate the diversity of Enterobacteriaceae present in soil and tomato fruits from three greenhouses with fertirigation system. These crop systems are an important alternative for production in protected agriculture; however, there is little information about the microb...

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Detalles Bibliográficos
Autores: Luna-Guevara, M. Lorena, Delgado-Alvarado, B. Adriana, Herrera-Cabrera, Edgar, Torres, Alfredo G., Avelino-Flores, Fabiola, Navarro-Ocaña, Armando, Parada-Guerra, Franceline
Formato: artículo
Fecha de Publicación:2012
Institución:Universidad Nacional de Trujillo
Repositorio:Revistas - Universidad Nacional de Trujillo
Lenguaje:español
OAI Identifier:oai:ojs.revistas.unitru.edu.pe:article/80
Enlace del recurso:https://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80
Nivel de acceso:acceso abierto
Materia:Enterobactericeae
diversity indices
organic matter
soil
tomato.
Enterobacterias
índices de diversidad
materia orgánica
suelo
tomate.
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network_acronym_str REVUNITRU
network_name_str Revistas - Universidad Nacional de Trujillo
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dc.title.none.fl_str_mv Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
Diversidad de enterobacterias asociadas a frutos de tomate (Lycopersi-cum sculentum Mill) y suelos de invernadero
title Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
spellingShingle Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
Luna-Guevara, M. Lorena
Enterobactericeae
diversity indices
organic matter
soil
tomato.
Enterobacterias
índices de diversidad
materia orgánica
suelo
tomate.
title_short Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
title_full Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
title_fullStr Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
title_full_unstemmed Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
title_sort Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soils
dc.creator.none.fl_str_mv Luna-Guevara, M. Lorena
Delgado-Alvarado, B. Adriana
Herrera-Cabrera, Edgar
Torres, Alfredo G.
Avelino-Flores, Fabiola
Navarro-Ocaña, Armando
Parada-Guerra, Franceline
author Luna-Guevara, M. Lorena
author_facet Luna-Guevara, M. Lorena
Delgado-Alvarado, B. Adriana
Herrera-Cabrera, Edgar
Torres, Alfredo G.
Avelino-Flores, Fabiola
Navarro-Ocaña, Armando
Parada-Guerra, Franceline
author_role author
author2 Delgado-Alvarado, B. Adriana
Herrera-Cabrera, Edgar
Torres, Alfredo G.
Avelino-Flores, Fabiola
Navarro-Ocaña, Armando
Parada-Guerra, Franceline
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv Enterobactericeae
diversity indices
organic matter
soil
tomato.
Enterobacterias
índices de diversidad
materia orgánica
suelo
tomate.
topic Enterobactericeae
diversity indices
organic matter
soil
tomato.
Enterobacterias
índices de diversidad
materia orgánica
suelo
tomate.
description The aim of this study was to evaluate the diversity of Enterobacteriaceae present in soil and tomato fruits from three greenhouses with fertirigation system. These crop systems are an important alternative for production in protected agriculture; however, there is little information about the microbiological quality of the fruit and its relationship with chemical soil characteristics. Soil evaluations consisted of analyzing organic matter content and pH. In the microbiological analysis were isolated and identified enterobacterias organisms from composite samples of soil and fruits at different stages of maturity (0, 50 and 100%). Culture media used was selective, differential and confirmatory testing with VITEK system. Enteropathogenic E. coli (EPEC) and enterotoxigenic E. coli (ETEC) were characterized genotypically, amplifying the lngA and bfpA genes by the technique of polymerase chain reaction (PCR). Diversity index (Simpson (D), Shannon-Wiener (H') and Chao estimator (SChao1) were calculated with the identified species. The species Enterobacter cloacae, Citrobacter freundii and C. brakii had a higher frequency of isolation, EPEC and ETEC were identified in soil samples and in fruits with 100% maturity. In soil, H' indices were positively correlated with the highest organic matter percentages. In fruit, although H 'and D showed less diverse bacterial communities, the isolation of ETEC and Shigella boydii on the fruit surface compromise their safety because they are usually consumed raw.
publishDate 2012
dc.date.none.fl_str_mv 2012-04-07
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80
url https://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80/89
dc.rights.none.fl_str_mv Derechos de autor 2012 Scientia Agropecuaria
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Derechos de autor 2012 Scientia Agropecuaria
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional de Trujillo
publisher.none.fl_str_mv Universidad Nacional de Trujillo
dc.source.none.fl_str_mv Scientia Agropecuaria; Vol. 3 Núm. 2 (2012): Abril - Junio; 161-169
Scientia Agropecuaria; Vol. 3 No. 2 (2012): April - June; 161-169
2306-6741
2077-9917
reponame:Revistas - Universidad Nacional de Trujillo
instname:Universidad Nacional de Trujillo
instacron:UNITRU
instname_str Universidad Nacional de Trujillo
instacron_str UNITRU
institution UNITRU
reponame_str Revistas - Universidad Nacional de Trujillo
collection Revistas - Universidad Nacional de Trujillo
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Diversity of enterobacteria associated with tomato (Lycopersicum scu-lentum Mill) fruits and greenhouse soilsDiversidad de enterobacterias asociadas a frutos de tomate (Lycopersi-cum sculentum Mill) y suelos de invernaderoLuna-Guevara, M. LorenaDelgado-Alvarado, B. AdrianaHerrera-Cabrera, EdgarTorres, Alfredo G.Avelino-Flores, FabiolaNavarro-Ocaña, ArmandoParada-Guerra, FrancelineEnterobactericeaediversity indicesorganic mattersoiltomato.Enterobacteriasíndices de diversidadmateria orgánicasuelotomate.The aim of this study was to evaluate the diversity of Enterobacteriaceae present in soil and tomato fruits from three greenhouses with fertirigation system. These crop systems are an important alternative for production in protected agriculture; however, there is little information about the microbiological quality of the fruit and its relationship with chemical soil characteristics. Soil evaluations consisted of analyzing organic matter content and pH. In the microbiological analysis were isolated and identified enterobacterias organisms from composite samples of soil and fruits at different stages of maturity (0, 50 and 100%). Culture media used was selective, differential and confirmatory testing with VITEK system. Enteropathogenic E. coli (EPEC) and enterotoxigenic E. coli (ETEC) were characterized genotypically, amplifying the lngA and bfpA genes by the technique of polymerase chain reaction (PCR). Diversity index (Simpson (D), Shannon-Wiener (H') and Chao estimator (SChao1) were calculated with the identified species. The species Enterobacter cloacae, Citrobacter freundii and C. brakii had a higher frequency of isolation, EPEC and ETEC were identified in soil samples and in fruits with 100% maturity. In soil, H' indices were positively correlated with the highest organic matter percentages. In fruit, although H 'and D showed less diverse bacterial communities, the isolation of ETEC and Shigella boydii on the fruit surface compromise their safety because they are usually consumed raw.El objetivo de este trabajo fue determinar la diversidad de enterobacterias presentes en suelo y tomates provenientes de tres invernaderos de fertirrigación. Estos sistemas de cultivo son una alternativa importante de producción en agricultura protegida, sin embargo, existe escasa información acerca de la calidad microbiológica de los frutos y su relación con las características químicas del suelo. Las evaluaciones del suelo consistieron en analizar el contenido de materia orgánica y pH. En los análisis microbiológicos se aislaron e identificaron enterobacterias en muestras compuestas de suelo y frutos con diferentes grados de madurez (0, 50 y 100%), utilizando medios de cultivo selectivos, diferenciales y pruebas confirmatorias con el sistema VITEK. Los patogrupos de Escherichia coli enteropatogena (EPEC) y enterotoxigénica (ETEC) se caracterizaron genotípicamente mediante la técnica de reacción en cadena de la polimerasa (PCR), amplificándose los genes bfpA y lngA. Con las especies identificadas se calcularon los índices de diversidad Simpson (D) y Shannon-Wiener (H´) y estimador de Chao (SChao1). Las especies Enterobacter cloacae, Citrobacter freundii y C. brakii presentaron mayor frecuencia de aislamiento, EPEC y ETEC fueron identificadas en muestras de suelo y en frutos con 100% de madurez. En suelo, los porcentajes de materia orgánica se correlacionaron positivamente con los índices H´. En fruto, aunque H´ y D reflejaron comunidades bacterianas menos diversas, el aislamiento de ETEC y Shigella boydii sobre la superficie del fruto comprometen su inocuidad debido a que habitualmente se consume en forma cruda.Universidad Nacional de Trujillo2012-04-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80Scientia Agropecuaria; Vol. 3 Núm. 2 (2012): Abril - Junio; 161-169Scientia Agropecuaria; Vol. 3 No. 2 (2012): April - June; 161-1692306-67412077-9917reponame:Revistas - Universidad Nacional de Trujilloinstname:Universidad Nacional de Trujilloinstacron:UNITRUspahttps://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/80/89Derechos de autor 2012 Scientia Agropecuariainfo:eu-repo/semantics/openAccessoai:ojs.revistas.unitru.edu.pe:article/802017-04-18T13:18:56Z
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