Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots
Descripción del Articulo
This paper represents partial fulfillment of a Ph.D. degree for CA in Plant Breeding and Plant Genetics at the University of Wisconsin-Madison. This work is supported by the USDA-ARS. C. Arbizu is partly funded by the National Council of Science and Technology of Perú (Concytec, by its initials in S...
| Autores: | , , , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2017 |
| Institución: | Consejo Nacional de Ciencia Tecnología e Innovación |
| Repositorio: | CONCYTEC-Institucional |
| Lenguaje: | inglés |
| OAI Identifier: | oai:repositorio.concytec.gob.pe:20.500.12390/1198 |
| Enlace del recurso: | https://hdl.handle.net/20.500.12390/1198 https://doi.org/10.2135/cropsci2017.02.0078 |
| Nivel de acceso: | acceso abierto |
| Materia: | Germplasm Carrots Daucus Alternaria leaf blight https://purl.org/pe-repo/ocde/ford#4.01.01 |
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Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| title |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| spellingShingle |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots Arbizu, CI Germplasm Carrots Daucus Alternaria leaf blight https://purl.org/pe-repo/ocde/ford#4.01.01 |
| title_short |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| title_full |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| title_fullStr |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| title_full_unstemmed |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| title_sort |
Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots |
| author |
Arbizu, CI |
| author_facet |
Arbizu, CI Tas, PM Simon, PW Spooner, DM |
| author_role |
author |
| author2 |
Tas, PM Simon, PW Spooner, DM |
| author2_role |
author author author |
| dc.contributor.author.fl_str_mv |
Arbizu, CI Tas, PM Simon, PW Spooner, DM |
| dc.subject.none.fl_str_mv |
Germplasm |
| topic |
Germplasm Carrots Daucus Alternaria leaf blight https://purl.org/pe-repo/ocde/ford#4.01.01 |
| dc.subject.es_PE.fl_str_mv |
Carrots Daucus Alternaria leaf blight |
| dc.subject.ocde.none.fl_str_mv |
https://purl.org/pe-repo/ocde/ford#4.01.01 |
| description |
This paper represents partial fulfillment of a Ph.D. degree for CA in Plant Breeding and Plant Genetics at the University of Wisconsin-Madison. This work is supported by the USDA-ARS. C. Arbizu is partly funded by the National Council of Science and Technology of Perú (Concytec, by its initials in Spanish). P. Tas was partly funded by the USDA-NIFA-Organic Agriculture Research and Extension Initiative award 2011-51300-30903 (to P.W. Simon). |
| publishDate |
2017 |
| dc.date.accessioned.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.available.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.issued.fl_str_mv |
2017 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12390/1198 |
| dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.2135/cropsci2017.02.0078 |
| dc.identifier.isi.none.fl_str_mv |
410728900033 |
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https://hdl.handle.net/20.500.12390/1198 https://doi.org/10.2135/cropsci2017.02.0078 |
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410728900033 |
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eng |
| language |
eng |
| dc.relation.ispartof.none.fl_str_mv |
CROP SCIENCE |
| dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess |
| eu_rights_str_mv |
openAccess |
| dc.publisher.none.fl_str_mv |
John Wiley & Sons |
| publisher.none.fl_str_mv |
John Wiley & Sons |
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reponame:CONCYTEC-Institucional instname:Consejo Nacional de Ciencia Tecnología e Innovación instacron:CONCYTEC |
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Consejo Nacional de Ciencia Tecnología e Innovación |
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CONCYTEC |
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CONCYTEC |
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CONCYTEC-Institucional |
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CONCYTEC-Institucional |
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Repositorio Institucional CONCYTEC |
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repositorio@concytec.gob.pe |
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1844883115117379584 |
| spelling |
Publicationrp03422600rp03423600rp03420600rp03421600Arbizu, CITas, PMSimon, PWSpooner, DM2024-05-30T23:13:38Z2024-05-30T23:13:38Z2017https://hdl.handle.net/20.500.12390/1198https://doi.org/10.2135/cropsci2017.02.0078410728900033This paper represents partial fulfillment of a Ph.D. degree for CA in Plant Breeding and Plant Genetics at the University of Wisconsin-Madison. This work is supported by the USDA-ARS. C. Arbizu is partly funded by the National Council of Science and Technology of Perú (Concytec, by its initials in Spanish). P. Tas was partly funded by the USDA-NIFA-Organic Agriculture Research and Extension Initiative award 2011-51300-30903 (to P.W. Simon).Plant scientists make inferences and predictions from phylogenetic trees to solve scientific problems. Crop losses due to disease damage is an important problem that many plant breeders would like to solve, so the ability to predict traits like disease resistance from phylogenetic trees derived from diverse germplasm would be a significant approach to facilitate cultivar improvement. Alternaria leaf blight (ALB) is among the most devastating diseases of carrots (Daucus spp., Apiaceae) worldwide. Thus, new approaches to identify resistant germplasm to this disease are needed. In a study of 106 accessions of wild and cultivated Daucus and related genera, we determined plant height is the best explanatory variable to predict ALB resistance using a phylogenetic linear regression model. Using the estimated area under the disease progress curve, the most resistant species to ALB were the non-carrot relative Ammi visnaga (L.) Lam. and the wild carrot relative D. crinitus Desf. A permutation tail probability test was conducted considering phylogenetic signal to evaluate the strength of association between the Daucus phylogeny and ALB resistance. We found that species belonging to clade A, which includes carrots and other Daucus possessing 2n = 18, 20, or 22 chromosomes, are slightly more resistant to ALB than members of other clades of the Daucus phylogeny.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengJohn Wiley & SonsCROP SCIENCEinfo:eu-repo/semantics/openAccessGermplasmCarrots-1Daucus-1Alternaria leaf blight-1https://purl.org/pe-repo/ocde/ford#4.01.01-1Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrotsinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#20.500.12390/1198oai:repositorio.concytec.gob.pe:20.500.12390/11982024-05-30 15:23:54.221http://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="673805ac-3d5e-4aee-a631-4c4733901193"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Phylogenetic Prediction of Alternaria Leaf Blight Resistance in Wild and Cultivated Species of Carrots</Title> <PublishedIn> <Publication> <Title>CROP SCIENCE</Title> </Publication> </PublishedIn> <PublicationDate>2017</PublicationDate> <DOI>https://doi.org/10.2135/cropsci2017.02.0078</DOI> <ISI-Number>410728900033</ISI-Number> <Authors> <Author> <DisplayName>Arbizu, CI</DisplayName> <Person id="rp03422" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Tas, PM</DisplayName> <Person id="rp03423" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Simon, PW</DisplayName> <Person id="rp03420" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Spooner, DM</DisplayName> <Person id="rp03421" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>John Wiley & Sons</DisplayName> <OrgUnit /> </Publisher> </Publishers> <Keyword>Germplasm</Keyword> <Keyword>Carrots</Keyword> <Keyword>Daucus</Keyword> <Keyword>Alternaria leaf blight</Keyword> <Abstract>Plant scientists make inferences and predictions from phylogenetic trees to solve scientific problems. Crop losses due to disease damage is an important problem that many plant breeders would like to solve, so the ability to predict traits like disease resistance from phylogenetic trees derived from diverse germplasm would be a significant approach to facilitate cultivar improvement. Alternaria leaf blight (ALB) is among the most devastating diseases of carrots (Daucus spp., Apiaceae) worldwide. Thus, new approaches to identify resistant germplasm to this disease are needed. In a study of 106 accessions of wild and cultivated Daucus and related genera, we determined plant height is the best explanatory variable to predict ALB resistance using a phylogenetic linear regression model. Using the estimated area under the disease progress curve, the most resistant species to ALB were the non-carrot relative Ammi visnaga (L.) Lam. and the wild carrot relative D. crinitus Desf. A permutation tail probability test was conducted considering phylogenetic signal to evaluate the strength of association between the Daucus phylogeny and ALB resistance. We found that species belonging to clade A, which includes carrots and other Daucus possessing 2n = 18, 20, or 22 chromosomes, are slightly more resistant to ALB than members of other clades of the Daucus phylogeny.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1 |
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13.444802 |
Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
