Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru
Descripción del Articulo
We are greatly grateful to all health personnel of Peru, especially to members of the Respiratory Virus Laboratory from NHI-Peru for their dedication in providing continued diagnostic and high-quality care during the pandemic. The authors would like to express our deep gratitude to Dr. Kelly Levano...
| Autores: | , , , , , , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2021 |
| Institución: | Consejo Nacional de Ciencia Tecnología e Innovación |
| Repositorio: | CONCYTEC-Institucional |
| Lenguaje: | inglés |
| OAI Identifier: | oai:repositorio.concytec.gob.pe:20.500.12390/3039 |
| Enlace del recurso: | https://hdl.handle.net/20.500.12390/3039 https://doi.org/10.1002/jmv.27167 |
| Nivel de acceso: | acceso abierto |
| Materia: | whole-genome sequencing evolution molecular epidemiology phylogenomics SARS-CoV-2 transmission https://purl.org/pe-repo/ocde/ford#3.03.08 |
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| dc.title.none.fl_str_mv |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| title |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| spellingShingle |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru Juscamayta-López, E. whole-genome sequencing evolution evolution molecular epidemiology molecular epidemiology phylogenomics SARS-CoV-2 SARS-CoV-2 transmission transmission https://purl.org/pe-repo/ocde/ford#3.03.08 |
| title_short |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| title_full |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| title_fullStr |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| title_full_unstemmed |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| title_sort |
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru |
| author |
Juscamayta-López, E. |
| author_facet |
Juscamayta-López, E. Carhuaricra D. Tarazona, D. Valdivia, F. Rojas, N. Maturrano L. Gavilán R. |
| author_role |
author |
| author2 |
Carhuaricra D. Tarazona, D. Valdivia, F. Rojas, N. Maturrano L. Gavilán R. |
| author2_role |
author author author author author author |
| dc.contributor.author.fl_str_mv |
Juscamayta-López, E. Carhuaricra D. Tarazona, D. Valdivia, F. Rojas, N. Maturrano L. Gavilán R. |
| dc.subject.none.fl_str_mv |
whole-genome sequencing |
| topic |
whole-genome sequencing evolution evolution molecular epidemiology molecular epidemiology phylogenomics SARS-CoV-2 SARS-CoV-2 transmission transmission https://purl.org/pe-repo/ocde/ford#3.03.08 |
| dc.subject.es_PE.fl_str_mv |
evolution evolution molecular epidemiology molecular epidemiology phylogenomics SARS-CoV-2 SARS-CoV-2 transmission transmission |
| dc.subject.ocde.none.fl_str_mv |
https://purl.org/pe-repo/ocde/ford#3.03.08 |
| description |
We are greatly grateful to all health personnel of Peru, especially to members of the Respiratory Virus Laboratory from NHI-Peru for their dedication in providing continued diagnostic and high-quality care during the pandemic. The authors would like to express our deep gratitude to Dr. Kelly Levano for his critical review of this manuscript. In addition, we wish to thank Guillermo Trujillo and members of the Respiratory Infectious Diseases Laboratory from NHI-Peru, especially Helen Horna and Liza Linares for their support for the Whole-Genome Sequencing. This work was supported by the National Institute of Health of Peru and the CONCYTEC-FONDECYT Program of Proyectos Especiales: Respuesta al COVID-19 2020-01-01 [grant number 034-2020-FONDECYT]. |
| publishDate |
2021 |
| dc.date.accessioned.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.available.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.issued.fl_str_mv |
2021 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12390/3039 |
| dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.1002/jmv.27167 |
| dc.identifier.scopus.none.fl_str_mv |
2-s2.0-85110124646 |
| url |
https://hdl.handle.net/20.500.12390/3039 https://doi.org/10.1002/jmv.27167 |
| identifier_str_mv |
2-s2.0-85110124646 |
| dc.language.iso.none.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartof.none.fl_str_mv |
Journal of Medical Virology |
| dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.uri.none.fl_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
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openAccess |
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https://creativecommons.org/licenses/by-nc-nd/4.0/ |
| dc.publisher.none.fl_str_mv |
John Wiley and Sons Inc |
| publisher.none.fl_str_mv |
John Wiley and Sons Inc |
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reponame:CONCYTEC-Institucional instname:Consejo Nacional de Ciencia Tecnología e Innovación instacron:CONCYTEC |
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Consejo Nacional de Ciencia Tecnología e Innovación |
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CONCYTEC |
| institution |
CONCYTEC |
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CONCYTEC-Institucional |
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CONCYTEC-Institucional |
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Repositorio Institucional CONCYTEC |
| repository.mail.fl_str_mv |
repositorio@concytec.gob.pe |
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1844883133311221760 |
| spelling |
Publicationrp08383600rp01089600rp08379600rp08382600rp06429600rp01086600rp08700600Juscamayta-López, E.Carhuaricra D.Tarazona, D.Valdivia, F.Rojas, N.Maturrano L.Gavilán R.2024-05-30T23:13:38Z2024-05-30T23:13:38Z2021https://hdl.handle.net/20.500.12390/3039https://doi.org/10.1002/jmv.271672-s2.0-85110124646We are greatly grateful to all health personnel of Peru, especially to members of the Respiratory Virus Laboratory from NHI-Peru for their dedication in providing continued diagnostic and high-quality care during the pandemic. The authors would like to express our deep gratitude to Dr. Kelly Levano for his critical review of this manuscript. In addition, we wish to thank Guillermo Trujillo and members of the Respiratory Infectious Diseases Laboratory from NHI-Peru, especially Helen Horna and Liza Linares for their support for the Whole-Genome Sequencing. This work was supported by the National Institute of Health of Peru and the CONCYTEC-FONDECYT Program of Proyectos Especiales: Respuesta al COVID-19 2020-01-01 [grant number 034-2020-FONDECYT].Peru has become one of the countries with the highest mortality rates from the current coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To investigate early transmission events and the genomic diversity of SARS-CoV-2 isolates circulating in Peru in the early COVID-19 pandemic, we analyzed 3472 viral genomes, of which 149 were from Peru. Phylogenomic analysis revealed multiple and independent introductions of the virus likely from Europe and Asia and a high diversity of genetic lineages circulating in Peru. In addition, we found evidence for community-driven transmission of SARS-CoV-2 as suggested by clusters of related viruses found in patients living in different regions of Peru. © 2021 Wiley Periodicals LLCConsejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengJohn Wiley and Sons IncJournal of Medical Virologyinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/4.0/whole-genome sequencingevolution-1evolution-1molecular epidemiology-1molecular epidemiology-1phylogenomics-1SARS-CoV-2-1SARS-CoV-2-1transmission-1transmission-1https://purl.org/pe-repo/ocde/ford#3.03.08-1Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peruinfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC20.500.12390/3039oai:repositorio.concytec.gob.pe:20.500.12390/30392024-05-30 16:13:23.004https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="fe34f50c-f5fd-410e-8689-f2084a1aba65"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru</Title> <PublishedIn> <Publication> <Title>Journal of Medical Virology</Title> </Publication> </PublishedIn> <PublicationDate>2021</PublicationDate> <DOI>https://doi.org/10.1002/jmv.27167</DOI> <SCP-Number>2-s2.0-85110124646</SCP-Number> <Authors> <Author> <DisplayName>Juscamayta-López, E.</DisplayName> <Person id="rp08383" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Carhuaricra D.</DisplayName> <Person id="rp01089" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Tarazona, D.</DisplayName> <Person id="rp08379" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Valdivia, F.</DisplayName> <Person id="rp08382" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Rojas, N.</DisplayName> <Person id="rp06429" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Maturrano L.</DisplayName> <Person id="rp01086" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Gavilán R.</DisplayName> <Person id="rp08700" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>John Wiley and Sons Inc</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by-nc-nd/4.0/</License> <Keyword>whole-genome sequencing</Keyword> <Keyword>evolution</Keyword> <Keyword>evolution</Keyword> <Keyword>molecular epidemiology</Keyword> <Keyword>molecular epidemiology</Keyword> <Keyword>phylogenomics</Keyword> <Keyword>SARS-CoV-2</Keyword> <Keyword>SARS-CoV-2</Keyword> <Keyword>transmission</Keyword> <Keyword>transmission</Keyword> <Abstract>Peru has become one of the countries with the highest mortality rates from the current coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To investigate early transmission events and the genomic diversity of SARS-CoV-2 isolates circulating in Peru in the early COVID-19 pandemic, we analyzed 3472 viral genomes, of which 149 were from Peru. Phylogenomic analysis revealed multiple and independent introductions of the virus likely from Europe and Asia and a high diversity of genetic lineages circulating in Peru. In addition, we found evidence for community-driven transmission of SARS-CoV-2 as suggested by clusters of related viruses found in patients living in different regions of Peru. © 2021 Wiley Periodicals LLC</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1 |
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13.394457 |
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La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
