Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding
Descripción del Articulo
Angel sharks are distributed worldwide in tropical to subtropical waters. Across the Eastern Pacific Ocean (EPO), two valid species are reported: The Pacific angelshark Squatina californica and the Chilean angelshark Squatina armata; however, there is still uncertainty about their geographic distrib...
| Autores: | , , , , , , , , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2021 |
| Institución: | Consejo Nacional de Ciencia Tecnología e Innovación |
| Repositorio: | CONCYTEC-Institucional |
| Lenguaje: | inglés |
| OAI Identifier: | oai:repositorio.concytec.gob.pe:20.500.12390/2337 |
| Enlace del recurso: | https://hdl.handle.net/20.500.12390/2337 https://doi.org/10.3390/d13050177 |
| Nivel de acceso: | acceso abierto |
| Materia: | MtDNA Biodiversity Eastern Pacific Ocean Elasmobranchii Humboldt current http://purl.org/pe-repo/ocde/ford#3.04.03 |
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Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| title |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| spellingShingle |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding Cañedo-Apolaya R.M. MtDNA Biodiversity Eastern Pacific Ocean Elasmobranchii Humboldt current http://purl.org/pe-repo/ocde/ford#3.04.03 |
| title_short |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| title_full |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| title_fullStr |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| title_full_unstemmed |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| title_sort |
Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding |
| author |
Cañedo-Apolaya R.M. |
| author_facet |
Cañedo-Apolaya R.M. Ortiz-Alvarez C. Alfaro-Cordova E. Alfaro-Shigueto J. Velez-Zuazo X. Mangel J.C. Siccha-Ramirez R. Yamashiro C. Ramirez J.L. |
| author_role |
author |
| author2 |
Ortiz-Alvarez C. Alfaro-Cordova E. Alfaro-Shigueto J. Velez-Zuazo X. Mangel J.C. Siccha-Ramirez R. Yamashiro C. Ramirez J.L. |
| author2_role |
author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Cañedo-Apolaya R.M. Ortiz-Alvarez C. Alfaro-Cordova E. Alfaro-Shigueto J. Velez-Zuazo X. Mangel J.C. Siccha-Ramirez R. Yamashiro C. Ramirez J.L. |
| dc.subject.none.fl_str_mv |
MtDNA |
| topic |
MtDNA Biodiversity Eastern Pacific Ocean Elasmobranchii Humboldt current http://purl.org/pe-repo/ocde/ford#3.04.03 |
| dc.subject.es_PE.fl_str_mv |
Biodiversity Eastern Pacific Ocean Elasmobranchii Humboldt current |
| dc.subject.ocde.none.fl_str_mv |
http://purl.org/pe-repo/ocde/ford#3.04.03 |
| description |
Angel sharks are distributed worldwide in tropical to subtropical waters. Across the Eastern Pacific Ocean (EPO), two valid species are reported: The Pacific angelshark Squatina californica and the Chilean angelshark Squatina armata; however, there is still uncertainty about their geographic distribution, mainly along the northern Peru coast where the species have been reported to be sympatric. The aim of this study is to describe the genetic differences between the genus Squatina from the EPO, including samples from northern Peru, and using DNA barcoding and three species delimitation models: Poisson tree processes (PTP) model, Bayesian implementation of the PTP (bPTP) model and the general mixed Yule coalescent (GMYC) model. The three approaches summarized 19 nominal Squatina species in 23 consensus Molecular Taxonomic Units (MOTU). Only 16 of them were in accordance with taxonomic identifications. From the EPO, four Squatina MOTUs were identified, one from North America (S. californica USA/Mexico) and three sampled in northern Peru, S. californica Peru, S. armata and Squatina sp. (a potential new species). This study contributes to the management and conservation policies of angel sharks in Peru, suggesting the presence of an undescribed species inhabiting the northern Peruvian coast. The use of molecular approaches, such as DNA barcoding, has the potential to quickly flag undescribed species in poorly studied regions, including the Southeast Pacific, within groups of ecologically and economically important groups like angel sharks. © 2021 by the authors. Licensee MDPI, Basel, Switzerland. |
| publishDate |
2021 |
| dc.date.accessioned.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.available.none.fl_str_mv |
2024-05-30T23:13:38Z |
| dc.date.issued.fl_str_mv |
2021 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12390/2337 |
| dc.identifier.doi.none.fl_str_mv |
https://doi.org/10.3390/d13050177 |
| dc.identifier.scopus.none.fl_str_mv |
2-s2.0-85105291849 |
| url |
https://hdl.handle.net/20.500.12390/2337 https://doi.org/10.3390/d13050177 |
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2-s2.0-85105291849 |
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eng |
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eng |
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Diversity |
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info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by/4.0/ |
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openAccess |
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https://creativecommons.org/licenses/by/4.0/ |
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MDPI AG |
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MDPI AG |
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Publicationrp05589600rp05591600rp05594600rp05595600rp05596600rp05590600rp05592600rp02310600rp05593600Cañedo-Apolaya R.M.Ortiz-Alvarez C.Alfaro-Cordova E.Alfaro-Shigueto J.Velez-Zuazo X.Mangel J.C.Siccha-Ramirez R.Yamashiro C.Ramirez J.L.2024-05-30T23:13:38Z2024-05-30T23:13:38Z2021https://hdl.handle.net/20.500.12390/2337https://doi.org/10.3390/d130501772-s2.0-85105291849Angel sharks are distributed worldwide in tropical to subtropical waters. Across the Eastern Pacific Ocean (EPO), two valid species are reported: The Pacific angelshark Squatina californica and the Chilean angelshark Squatina armata; however, there is still uncertainty about their geographic distribution, mainly along the northern Peru coast where the species have been reported to be sympatric. The aim of this study is to describe the genetic differences between the genus Squatina from the EPO, including samples from northern Peru, and using DNA barcoding and three species delimitation models: Poisson tree processes (PTP) model, Bayesian implementation of the PTP (bPTP) model and the general mixed Yule coalescent (GMYC) model. The three approaches summarized 19 nominal Squatina species in 23 consensus Molecular Taxonomic Units (MOTU). Only 16 of them were in accordance with taxonomic identifications. From the EPO, four Squatina MOTUs were identified, one from North America (S. californica USA/Mexico) and three sampled in northern Peru, S. californica Peru, S. armata and Squatina sp. (a potential new species). This study contributes to the management and conservation policies of angel sharks in Peru, suggesting the presence of an undescribed species inhabiting the northern Peruvian coast. The use of molecular approaches, such as DNA barcoding, has the potential to quickly flag undescribed species in poorly studied regions, including the Southeast Pacific, within groups of ecologically and economically important groups like angel sharks. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengMDPI AGDiversityinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/MtDNABiodiversity-1Eastern Pacific Ocean-1Elasmobranchii-1Humboldt current-1http://purl.org/pe-repo/ocde/ford#3.04.03-1Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcodinginfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTECORIGINALSpecies Delimitation-diversity.pdfSpecies Delimitation-diversity.pdfapplication/pdf3397173https://repositorio.concytec.gob.pe/bitstreams/00435b41-ff7c-425a-a899-4d83104c6d01/download47f410e9d46af2a00eb415a7f596e309MD51TEXTSpecies Delimitation-diversity.pdf.txtSpecies Delimitation-diversity.pdf.txtExtracted texttext/plain60704https://repositorio.concytec.gob.pe/bitstreams/7aeda645-f8b7-484a-aa57-1dc9395e4665/downloadb0b3f0a6e705108c2f0c4381787b6bedMD52THUMBNAILSpecies Delimitation-diversity.pdf.jpgSpecies Delimitation-diversity.pdf.jpgGenerated Thumbnailimage/jpeg5776https://repositorio.concytec.gob.pe/bitstreams/f5aab3ba-a8d1-4691-82fb-6a5557bb6b7e/download0fa80102b306ac9bdea0d07247e8af72MD5320.500.12390/2337oai:repositorio.concytec.gob.pe:20.500.12390/23372025-01-16 22:00:20.377https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessopen accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="0fe41f21-8713-49bb-8095-a7ee1f80451f"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Species delimitation of southeast pacific angel sharks (Squatina spp.) reveals hidden diversity through dna barcoding</Title> <PublishedIn> <Publication> <Title>Diversity</Title> </Publication> </PublishedIn> <PublicationDate>2021</PublicationDate> <DOI>https://doi.org/10.3390/d13050177</DOI> <SCP-Number>2-s2.0-85105291849</SCP-Number> <Authors> <Author> <DisplayName>Cañedo-Apolaya R.M.</DisplayName> <Person id="rp05589" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Ortiz-Alvarez C.</DisplayName> <Person id="rp05591" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Alfaro-Cordova E.</DisplayName> <Person id="rp05594" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Alfaro-Shigueto J.</DisplayName> <Person id="rp05595" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Velez-Zuazo X.</DisplayName> <Person id="rp05596" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Mangel J.C.</DisplayName> <Person id="rp05590" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Siccha-Ramirez R.</DisplayName> <Person id="rp05592" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Yamashiro C.</DisplayName> <Person id="rp02310" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Ramirez J.L.</DisplayName> <Person id="rp05593" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>MDPI AG</DisplayName> <OrgUnit /> </Publisher> </Publishers> <License>https://creativecommons.org/licenses/by/4.0/</License> <Keyword>MtDNA</Keyword> <Keyword>Biodiversity</Keyword> <Keyword>Eastern Pacific Ocean</Keyword> <Keyword>Elasmobranchii</Keyword> <Keyword>Humboldt current</Keyword> <Abstract>Angel sharks are distributed worldwide in tropical to subtropical waters. Across the Eastern Pacific Ocean (EPO), two valid species are reported: The Pacific angelshark Squatina californica and the Chilean angelshark Squatina armata; however, there is still uncertainty about their geographic distribution, mainly along the northern Peru coast where the species have been reported to be sympatric. The aim of this study is to describe the genetic differences between the genus Squatina from the EPO, including samples from northern Peru, and using DNA barcoding and three species delimitation models: Poisson tree processes (PTP) model, Bayesian implementation of the PTP (bPTP) model and the general mixed Yule coalescent (GMYC) model. The three approaches summarized 19 nominal Squatina species in 23 consensus Molecular Taxonomic Units (MOTU). Only 16 of them were in accordance with taxonomic identifications. From the EPO, four Squatina MOTUs were identified, one from North America (S. californica USA/Mexico) and three sampled in northern Peru, S. californica Peru, S. armata and Squatina sp. (a potential new species). This study contributes to the management and conservation policies of angel sharks in Peru, suggesting the presence of an undescribed species inhabiting the northern Peruvian coast. The use of molecular approaches, such as DNA barcoding, has the potential to quickly flag undescribed species in poorly studied regions, including the Southeast Pacific, within groups of ecologically and economically important groups like angel sharks. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1 |
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Nota importante:
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).
La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).