Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja

Descripción del Articulo

(099-FINCyT-EQUIP-2009)/(076-FINCyT-PIN-2008)
Detalles Bibliográficos
Autores: Lozano, R, Ponce, O, Ramirez, M, Mostajo, N, Orjeda, G
Formato: artículo
Fecha de Publicación:2012
Institución:Consejo Nacional de Ciencia Tecnología e Innovación
Repositorio:CONCYTEC-Institucional
Lenguaje:inglés
OAI Identifier:oai:repositorio.concytec.gob.pe:20.500.12390/1249
Enlace del recurso:https://hdl.handle.net/20.500.12390/1249
https://doi.org/10.1371/journal.pone.0034775
Nivel de acceso:acceso abierto
Materia:Protein domains
Plant genomics
https://purl.org/pe-repo/ocde/ford#4.00.00
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oai_identifier_str oai:repositorio.concytec.gob.pe:20.500.12390/1249
network_acronym_str CONC
network_name_str CONCYTEC-Institucional
repository_id_str 4689
dc.title.none.fl_str_mv Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
title Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
spellingShingle Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
Lozano, R
Protein domains
Plant genomics
Plant genomics
https://purl.org/pe-repo/ocde/ford#4.00.00
title_short Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
title_full Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
title_fullStr Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
title_full_unstemmed Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
title_sort Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
author Lozano, R
author_facet Lozano, R
Ponce, O
Ramirez, M
Mostajo, N
Orjeda, G
author_role author
author2 Ponce, O
Ramirez, M
Mostajo, N
Orjeda, G
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Lozano, R
Ponce, O
Ramirez, M
Mostajo, N
Orjeda, G
dc.subject.none.fl_str_mv Protein domains
topic Protein domains
Plant genomics
Plant genomics
https://purl.org/pe-repo/ocde/ford#4.00.00
dc.subject.es_PE.fl_str_mv Plant genomics
Plant genomics
dc.subject.ocde.none.fl_str_mv https://purl.org/pe-repo/ocde/ford#4.00.00
description (099-FINCyT-EQUIP-2009)/(076-FINCyT-PIN-2008)
publishDate 2012
dc.date.accessioned.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.available.none.fl_str_mv 2024-05-30T23:13:38Z
dc.date.issued.fl_str_mv 2012
dc.type.none.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12390/1249
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1371/journal.pone.0034775
dc.identifier.isi.none.fl_str_mv 305012700058
url https://hdl.handle.net/20.500.12390/1249
https://doi.org/10.1371/journal.pone.0034775
identifier_str_mv 305012700058
dc.language.iso.none.fl_str_mv eng
language eng
dc.relation.ispartof.none.fl_str_mv PLOS ONE
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv PLOS
publisher.none.fl_str_mv PLOS
dc.source.none.fl_str_mv reponame:CONCYTEC-Institucional
instname:Consejo Nacional de Ciencia Tecnología e Innovación
instacron:CONCYTEC
instname_str Consejo Nacional de Ciencia Tecnología e Innovación
instacron_str CONCYTEC
institution CONCYTEC
reponame_str CONCYTEC-Institucional
collection CONCYTEC-Institucional
repository.name.fl_str_mv Repositorio Institucional CONCYTEC
repository.mail.fl_str_mv repositorio@concytec.gob.pe
_version_ 1839175691366563840
spelling Publicationrp00555500rp01644500rp00795400rp03607600rp01572500Lozano, RPonce, ORamirez, MMostajo, NOrjeda, G2024-05-30T23:13:38Z2024-05-30T23:13:38Z2012https://hdl.handle.net/20.500.12390/1249https://doi.org/10.1371/journal.pone.0034775305012700058(099-FINCyT-EQUIP-2009)/(076-FINCyT-PIN-2008)The majority of disease resistance (R) genes identified to date in plants encode a nucleotide-binding site (NBS) and leucine-rich repeat (LRR) domain containing protein. Additional domains such as coiled-coil (CC) and TOLL/interleukin-1 receptor (TIR) domains can also be present. In the recently sequenced Solanum tuberosum group phureja genome we used HMM models and manual curation to annotate 435 NBS-encoding R gene homologs and 142 NBS-derived genes that lack the NBS domain. Highly similar homologs for most previously documented Solanaceae R genes were identified. A surprising ∼41% (179) of the 435 NBS-encoding genes are pseudogenes primarily caused by premature stop codons or frameshift mutations. Alignment of 81.80% of the 577 homologs to S. tuberosum group phureja pseudomolecules revealed non-random distribution of the R-genes; 362 of 470 genes were found in high density clusters on 11 chromosomes.Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica - ConcytecengPLOSPLOS ONEinfo:eu-repo/semantics/openAccessProtein domainsPlant genomics-1Plant genomics-1https://purl.org/pe-repo/ocde/ford#4.00.00-1Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phurejainfo:eu-repo/semantics/articlereponame:CONCYTEC-Institucionalinstname:Consejo Nacional de Ciencia Tecnología e Innovacióninstacron:CONCYTEC20.500.12390/1249oai:repositorio.concytec.gob.pe:20.500.12390/12492024-05-30 15:46:04.168http://purl.org/coar/access_right/c_14cbinfo:eu-repo/semantics/closedAccessmetadata only accesshttps://repositorio.concytec.gob.peRepositorio Institucional CONCYTECrepositorio@concytec.gob.pe#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#<Publication xmlns="https://www.openaire.eu/cerif-profile/1.1/" id="ab29184e-eaba-4000-b0d8-ac2d6bbb6f3f"> <Type xmlns="https://www.openaire.eu/cerif-profile/vocab/COAR_Publication_Types">http://purl.org/coar/resource_type/c_1843</Type> <Language>eng</Language> <Title>Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja</Title> <PublishedIn> <Publication> <Title>PLOS ONE</Title> </Publication> </PublishedIn> <PublicationDate>2012</PublicationDate> <DOI>https://doi.org/10.1371/journal.pone.0034775</DOI> <ISI-Number>305012700058</ISI-Number> <Authors> <Author> <DisplayName>Lozano, R</DisplayName> <Person id="rp00555" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Ponce, O</DisplayName> <Person id="rp01644" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Ramirez, M</DisplayName> <Person id="rp00795" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Mostajo, N</DisplayName> <Person id="rp03607" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> <Author> <DisplayName>Orjeda, G</DisplayName> <Person id="rp01572" /> <Affiliation> <OrgUnit> </OrgUnit> </Affiliation> </Author> </Authors> <Editors> </Editors> <Publishers> <Publisher> <DisplayName>PLOS</DisplayName> <OrgUnit /> </Publisher> </Publishers> <Keyword>Protein domains</Keyword> <Keyword>Plant genomics</Keyword> <Keyword>Plant genomics</Keyword> <Abstract>The majority of disease resistance (R) genes identified to date in plants encode a nucleotide-binding site (NBS) and leucine-rich repeat (LRR) domain containing protein. Additional domains such as coiled-coil (CC) and TOLL/interleukin-1 receptor (TIR) domains can also be present. In the recently sequenced Solanum tuberosum group phureja genome we used HMM models and manual curation to annotate 435 NBS-encoding R gene homologs and 142 NBS-derived genes that lack the NBS domain. Highly similar homologs for most previously documented Solanaceae R genes were identified. A surprising ∼41% (179) of the 435 NBS-encoding genes are pseudogenes primarily caused by premature stop codons or frameshift mutations. Alignment of 81.80% of the 577 homologs to S. tuberosum group phureja pseudomolecules revealed non-random distribution of the R-genes; 362 of 470 genes were found in high density clusters on 11 chromosomes.</Abstract> <Access xmlns="http://purl.org/coar/access_right" > </Access> </Publication> -1
score 13.448595
Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja
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