Facial compartmentalization in the skull of extant pygmy whales (Kogiidae) is a unique feature among cetaceans that allows for the housing of a wide array of organs responsible for echolocation. Recent fossil findings indicate a remarkable disparity of the facial bone organization in Miocene kogiids, but the significance of such a rearrangement for the evolution of the clade has been barely explored. Here we describe Kogia danomurai sp. nov., a late Miocene (c. 5.8 Ma) taxon from the Pisco Formation (Peru), based on a partially preserved skull with a new facial bone pattern. Phylogenetic analysis recovers K. danomurai as the most basal representative of the extant genus Kogia, displaying a combination of derived (incipiently developed and excavated sagittal facial crest) and plesiomorphic features (high position of the temporal fossa, and antorbital notch not transformed into a narrow sl...