Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
Descripción del Articulo
The aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 med...
| Autores: | , , , , |
|---|---|
| Formato: | artículo |
| Fecha de Publicación: | 2023 |
| Institución: | Universidad Nacional Mayor de San Marcos |
| Repositorio: | Revistas - Universidad Nacional Mayor de San Marcos |
| Lenguaje: | español |
| OAI Identifier: | oai:ojs.csi.unmsm:article/22411 |
| Enlace del recurso: | https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411 |
| Nivel de acceso: | acceso abierto |
| Materia: | L-asparaginase Bacillus sp. halotolerant gen ansA3 Maras saltern L-asparaginasa Bacillus sp. halotolerante salinas de Maras |
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Revistas - Universidad Nacional Mayor de San Marcos |
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Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru Caracterización bioinformática y producción de L-asparaginasa de Bacillus sp. M62 aislado de las salinas de Maras, Cusco, Perú |
| title |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| spellingShingle |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru Calderón-Toledo, Susana L-asparaginase Bacillus sp. halotolerant gen ansA3 Maras saltern L-asparaginasa Bacillus sp. halotolerante gen ansA3 salinas de Maras |
| title_short |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| title_full |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| title_fullStr |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| title_full_unstemmed |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| title_sort |
Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru |
| dc.creator.none.fl_str_mv |
Calderón-Toledo, Susana Tapia-Bañez, Ysamar Jiménez-Aliaga, Karim Esquerre-Huallpa, Cynthia Zavaleta, Amparo Iris Calderón-Toledo, Susana Tapia-Bañez, Ysamar Jiménez-Aliaga, Karim Esquerre-Huallpa, Cynthia Zavaleta, Amparo Iris |
| author |
Calderón-Toledo, Susana |
| author_facet |
Calderón-Toledo, Susana Tapia-Bañez, Ysamar Jiménez-Aliaga, Karim Esquerre-Huallpa, Cynthia Zavaleta, Amparo Iris |
| author_role |
author |
| author2 |
Tapia-Bañez, Ysamar Jiménez-Aliaga, Karim Esquerre-Huallpa, Cynthia Zavaleta, Amparo Iris |
| author2_role |
author author author author |
| dc.subject.none.fl_str_mv |
L-asparaginase Bacillus sp. halotolerant gen ansA3 Maras saltern L-asparaginasa Bacillus sp. halotolerante gen ansA3 salinas de Maras |
| topic |
L-asparaginase Bacillus sp. halotolerant gen ansA3 Maras saltern L-asparaginasa Bacillus sp. halotolerante gen ansA3 salinas de Maras |
| description |
The aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 medium, containing 0.0075% bromophenol blue, at pH 7.4 and 37°C for 72 hours. Genomic DNA was extracted to amplify the 16S ribosomal genes and the ansA3 gene. The amino acid sequence encoded by the ansA3 gene was predicted using bioinformatic analysis. The production of intracellular and extracellular L-asparaginase was evaluated at different levels of glucose, L-asparagine, NaCl, and pH in modified M9 medium. Additionally, the enzymatic activities of L-asparaginase and L-glutaminase were determined by quantifying the released ammonium using the Nessler method. Bacillus sp. M62 showed the change in color of the modified M9 medium, high similarity, and evolutionary closeness to Bacillus licheniformis. The amplified ansA3 gene was found to encode for 319 amino acids, with a predicted active site pattern (GFVITHGTDTM) and 15 immunogenic sites. The production of extracellular L-asparaginase was found to be higher than intracellular L-asparaginase and was optimized from 0.37 U/mL (0.24 U/mg) to 2.15 ± 0.39 U/mL (0.63 U/mg). Finally, it was found that Bacillus sp. M62 presents extracellular L-asparaginase with minimal L-glutaminase activity. |
| publishDate |
2023 |
| dc.date.none.fl_str_mv |
2023-03-14 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
| dc.identifier.none.fl_str_mv |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411 10.15381/rpb.v30i1.22411 |
| url |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411 |
| identifier_str_mv |
10.15381/rpb.v30i1.22411 |
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spa |
| language |
spa |
| dc.relation.none.fl_str_mv |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411/19372 10.15381/rpb.v30i1.22411.g19372 |
| dc.rights.none.fl_str_mv |
https://creativecommons.org/licenses/by/4.0 info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by/4.0 |
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openAccess |
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application/pdf |
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Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
| publisher.none.fl_str_mv |
Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
| dc.source.none.fl_str_mv |
Revista Peruana de Biología; Vol. 30 Núm. 1 (2023); e22411 Revista Peruana de Biología; Vol. 30 No. 1 (2023); e22411 1727-9933 1561-0837 reponame:Revistas - Universidad Nacional Mayor de San Marcos instname:Universidad Nacional Mayor de San Marcos instacron:UNMSM |
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Universidad Nacional Mayor de San Marcos |
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Revistas - Universidad Nacional Mayor de San Marcos |
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Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, PeruCaracterización bioinformática y producción de L-asparaginasa de Bacillus sp. M62 aislado de las salinas de Maras, Cusco, PerúCalderón-Toledo, SusanaTapia-Bañez, YsamarJiménez-Aliaga, KarimEsquerre-Huallpa, CynthiaZavaleta, Amparo IrisCalderón-Toledo, SusanaTapia-Bañez, YsamarJiménez-Aliaga, KarimEsquerre-Huallpa, CynthiaZavaleta, Amparo IrisL-asparaginaseBacillus sp. halotolerantgen ansA3Maras salternL-asparaginasaBacillus sp. halotolerantegen ansA3salinas de MarasThe aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 medium, containing 0.0075% bromophenol blue, at pH 7.4 and 37°C for 72 hours. Genomic DNA was extracted to amplify the 16S ribosomal genes and the ansA3 gene. The amino acid sequence encoded by the ansA3 gene was predicted using bioinformatic analysis. The production of intracellular and extracellular L-asparaginase was evaluated at different levels of glucose, L-asparagine, NaCl, and pH in modified M9 medium. Additionally, the enzymatic activities of L-asparaginase and L-glutaminase were determined by quantifying the released ammonium using the Nessler method. Bacillus sp. M62 showed the change in color of the modified M9 medium, high similarity, and evolutionary closeness to Bacillus licheniformis. The amplified ansA3 gene was found to encode for 319 amino acids, with a predicted active site pattern (GFVITHGTDTM) and 15 immunogenic sites. The production of extracellular L-asparaginase was found to be higher than intracellular L-asparaginase and was optimized from 0.37 U/mL (0.24 U/mg) to 2.15 ± 0.39 U/mL (0.63 U/mg). Finally, it was found that Bacillus sp. M62 presents extracellular L-asparaginase with minimal L-glutaminase activity.El objetivo del estudio fue realizar la caracterización bioinformática, así como optimizar la producción de L-asparaginasa extracelular de Bacillus sp. M62 aislada de las salinas de Maras (Cusco). Para ello, se verificó la producción de L-asparaginasa mediante el viraje del medio M9 modificado con azul de bromofenol 0.0075%, pH 7.4 a 37 °C por 72 h. A la vez, se extrajo el ADN genómico para amplificar los genes ribosómicos 16S y el gen ansA3. La secuencia aminoacídica codificada por el gen ansA3 se predijo mediante análisis bioinformático. La producción de L-asparaginasa intracelular y extracelular se evaluó a diferentes niveles de glucosa, L-asparagina, NaCl y pH en el medio M9 modificado. Adicionalmente, las actividades enzimáticas de L-asparaginasa y L-glutaminasa se determinaron mediante cuantificación del amonio liberado por el método de Nessler. Así, Bacillus sp. M62 produjo el viraje del medio M9 modificado, obtuvo alta similitud y cercanía evolutiva con Bacillus licheniformis, se encontró que el gen ansA3 amplificado codificaba para 319 aa, dentro de la cual se predijo una secuencia patrón del sitio activo (GFVITHGTDTM ) y 15 sitios inmunogénicos. La producción de L-asparaginasa extracelular fue superior a la intracelular, la que se optimizó de 0.37 U/mL (0.24 U/mg) a 2.15 ± 0.39 U/mL (0.63 U/mg). Finalmente, se encontró que Bacillus sp. M62 presenta L-asparaginasa extracelular con mínima actividad de L-glutaminasa.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2023-03-14info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/2241110.15381/rpb.v30i1.22411Revista Peruana de Biología; Vol. 30 Núm. 1 (2023); e22411Revista Peruana de Biología; Vol. 30 No. 1 (2023); e224111727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411/1937210.15381/rpb.v30i1.22411.g19372Derechos de autor 2023 Susana Calderón-Toledo, Ysamar Tapia Bañez, Karim Jiménez-Aliaga, Cynthia Esquerre-Huallpa, Amparo Iris Zavaletahttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/224112023-03-15T12:31:52Z |
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13.945474 |
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La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).