Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru

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The aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 med...

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Autores: Calderón-Toledo, Susana, Tapia-Bañez, Ysamar, Jiménez-Aliaga, Karim, Esquerre-Huallpa, Cynthia, Zavaleta, Amparo Iris
Formato: artículo
Fecha de Publicación:2023
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:ojs.csi.unmsm:article/22411
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411
Nivel de acceso:acceso abierto
Materia:L-asparaginase
Bacillus sp. halotolerant
gen ansA3
Maras saltern
L-asparaginasa
Bacillus sp. halotolerante
salinas de Maras
id REVUNMSM_b4ec4464469ed9ec71833497b9d017bc
oai_identifier_str oai:ojs.csi.unmsm:article/22411
network_acronym_str REVUNMSM
network_name_str Revistas - Universidad Nacional Mayor de San Marcos
repository_id_str
dc.title.none.fl_str_mv Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
Caracterización bioinformática y producción de L-asparaginasa de Bacillus sp. M62 aislado de las salinas de Maras, Cusco, Perú
title Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
spellingShingle Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
Calderón-Toledo, Susana
L-asparaginase
Bacillus sp. halotolerant
gen ansA3
Maras saltern
L-asparaginasa
Bacillus sp. halotolerante
gen ansA3
salinas de Maras
title_short Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
title_full Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
title_fullStr Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
title_full_unstemmed Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
title_sort Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, Peru
dc.creator.none.fl_str_mv Calderón-Toledo, Susana
Tapia-Bañez, Ysamar
Jiménez-Aliaga, Karim
Esquerre-Huallpa, Cynthia
Zavaleta, Amparo Iris
Calderón-Toledo, Susana
Tapia-Bañez, Ysamar
Jiménez-Aliaga, Karim
Esquerre-Huallpa, Cynthia
Zavaleta, Amparo Iris
author Calderón-Toledo, Susana
author_facet Calderón-Toledo, Susana
Tapia-Bañez, Ysamar
Jiménez-Aliaga, Karim
Esquerre-Huallpa, Cynthia
Zavaleta, Amparo Iris
author_role author
author2 Tapia-Bañez, Ysamar
Jiménez-Aliaga, Karim
Esquerre-Huallpa, Cynthia
Zavaleta, Amparo Iris
author2_role author
author
author
author
dc.subject.none.fl_str_mv L-asparaginase
Bacillus sp. halotolerant
gen ansA3
Maras saltern
L-asparaginasa
Bacillus sp. halotolerante
gen ansA3
salinas de Maras
topic L-asparaginase
Bacillus sp. halotolerant
gen ansA3
Maras saltern
L-asparaginasa
Bacillus sp. halotolerante
gen ansA3
salinas de Maras
description The aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 medium, containing 0.0075% bromophenol blue, at pH 7.4 and 37°C for 72 hours. Genomic DNA was extracted to amplify the 16S ribosomal genes and the ansA3 gene. The amino acid sequence encoded by the ansA3 gene was predicted using bioinformatic analysis. The production of intracellular and extracellular L-asparaginase was evaluated at different levels of glucose, L-asparagine, NaCl, and pH in modified M9 medium. Additionally, the enzymatic activities of L-asparaginase and L-glutaminase were determined by quantifying the released ammonium using the Nessler method. Bacillus sp. M62 showed the change in color of the modified M9 medium, high similarity, and evolutionary closeness to Bacillus licheniformis. The amplified ansA3 gene was found to encode for 319 amino acids, with a predicted active site pattern (GFVITHGTDTM) and 15 immunogenic sites. The production of extracellular L-asparaginase was found to be higher than intracellular L-asparaginase and was optimized from 0.37 U/mL (0.24 U/mg) to 2.15 ± 0.39 U/mL (0.63 U/mg). Finally, it was found that Bacillus sp. M62 presents extracellular L-asparaginase with minimal L-glutaminase activity.
publishDate 2023
dc.date.none.fl_str_mv 2023-03-14
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411
10.15381/rpb.v30i1.22411
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411
identifier_str_mv 10.15381/rpb.v30i1.22411
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411/19372
10.15381/rpb.v30i1.22411.g19372
dc.rights.none.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 30 Núm. 1 (2023); e22411
Revista Peruana de Biología; Vol. 30 No. 1 (2023); e22411
1727-9933
1561-0837
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
instacron:UNMSM
instname_str Universidad Nacional Mayor de San Marcos
instacron_str UNMSM
institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Bioinformatic characterization and production of L-asparaginase from Bacillus sp. M62 isolated from the Maras saltern, Cusco, PeruCaracterización bioinformática y producción de L-asparaginasa de Bacillus sp. M62 aislado de las salinas de Maras, Cusco, PerúCalderón-Toledo, SusanaTapia-Bañez, YsamarJiménez-Aliaga, KarimEsquerre-Huallpa, CynthiaZavaleta, Amparo IrisCalderón-Toledo, SusanaTapia-Bañez, YsamarJiménez-Aliaga, KarimEsquerre-Huallpa, CynthiaZavaleta, Amparo IrisL-asparaginaseBacillus sp. halotolerantgen ansA3Maras salternL-asparaginasaBacillus sp. halotolerantegen ansA3salinas de MarasThe aim of this study was to perform bioinformatics characterization and optimize the production of extracellular L-asparaginase from Bacillus sp. M62, isolated from the Maras salt ponds (Cusco). To achieve this, the production of L-asparaginase was verified by the change in color of modified M9 medium, containing 0.0075% bromophenol blue, at pH 7.4 and 37°C for 72 hours. Genomic DNA was extracted to amplify the 16S ribosomal genes and the ansA3 gene. The amino acid sequence encoded by the ansA3 gene was predicted using bioinformatic analysis. The production of intracellular and extracellular L-asparaginase was evaluated at different levels of glucose, L-asparagine, NaCl, and pH in modified M9 medium. Additionally, the enzymatic activities of L-asparaginase and L-glutaminase were determined by quantifying the released ammonium using the Nessler method. Bacillus sp. M62 showed the change in color of the modified M9 medium, high similarity, and evolutionary closeness to Bacillus licheniformis. The amplified ansA3 gene was found to encode for 319 amino acids, with a predicted active site pattern (GFVITHGTDTM) and 15 immunogenic sites. The production of extracellular L-asparaginase was found to be higher than intracellular L-asparaginase and was optimized from 0.37 U/mL (0.24 U/mg) to 2.15 ± 0.39 U/mL (0.63 U/mg). Finally, it was found that Bacillus sp. M62 presents extracellular L-asparaginase with minimal L-glutaminase activity.El objetivo del estudio fue realizar la caracterización bioinformática, así como optimizar la producción de L-asparaginasa extracelular de Bacillus sp. M62 aislada de las salinas de Maras (Cusco). Para ello, se verificó la producción de L-asparaginasa mediante el viraje del medio M9 modificado con azul de bromofenol 0.0075%, pH 7.4 a 37 °C por 72 h. A la vez, se extrajo el ADN genómico para amplificar los genes ribosómicos 16S y el gen ansA3. La secuencia aminoacídica codificada por el gen ansA3 se predijo mediante análisis bioinformático. La producción de L-asparaginasa intracelular y extracelular se evaluó a diferentes niveles de glucosa, L-asparagina, NaCl y pH en el medio M9 modificado. Adicionalmente, las actividades enzimáticas de L-asparaginasa y L-glutaminasa se determinaron mediante cuantificación del amonio liberado por el método de Nessler. Así, Bacillus sp. M62 produjo el viraje del medio M9 modificado, obtuvo alta similitud y cercanía evolutiva con Bacillus licheniformis, se encontró que el gen ansA3 amplificado codificaba para 319 aa, dentro de la cual se predijo una secuencia patrón del sitio activo (GFVITHGTDTM ) y 15 sitios inmunogénicos. La producción de L-asparaginasa extracelular fue superior a la intracelular, la que se optimizó de 0.37 U/mL (0.24 U/mg) a 2.15 ± 0.39 U/mL (0.63 U/mg). Finalmente, se encontró que Bacillus sp. M62 presenta L-asparaginasa extracelular con mínima actividad de L-glutaminasa.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2023-03-14info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/2241110.15381/rpb.v30i1.22411Revista Peruana de Biología; Vol. 30 Núm. 1 (2023); e22411Revista Peruana de Biología; Vol. 30 No. 1 (2023); e224111727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/22411/1937210.15381/rpb.v30i1.22411.g19372Derechos de autor 2023 Susana Calderón-Toledo, Ysamar Tapia Bañez, Karim Jiménez-Aliaga, Cynthia Esquerre-Huallpa, Amparo Iris Zavaletahttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/224112023-03-15T12:31:52Z
score 13.945474
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