High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
Descripción del Articulo
The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Curr...
Autores: | , , |
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Formato: | artículo |
Fecha de Publicación: | 2017 |
Institución: | Universidad Nacional Mayor de San Marcos |
Repositorio: | Revistas - Universidad Nacional Mayor de San Marcos |
Lenguaje: | inglés |
OAI Identifier: | oai:ojs.csi.unmsm:article/12807 |
Enlace del recurso: | https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807 |
Nivel de acceso: | acceso abierto |
Materia: | Southeast Pacific Peruvian sea fish genetics gene flow historical demography Pacífico Sudeste mar peruana genética de peces flujo génico demografía histórica. |
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Revistas - Universidad Nacional Mayor de San Marcos |
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dc.title.none.fl_str_mv |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences Alta conectividad genética y expansión poblacional de Scomber japonicus en en la parte norte del Sistema de Corriente de Humboldt reveladas por secuencias de la región control mitocondrial |
title |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
spellingShingle |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences Barahona Padilla, Sergio Paolo Southeast Pacific Peruvian sea fish genetics gene flow historical demography Pacífico Sudeste mar peruana genética de peces flujo génico demografía histórica. |
title_short |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
title_full |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
title_fullStr |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
title_full_unstemmed |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
title_sort |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences |
dc.creator.none.fl_str_mv |
Barahona Padilla, Sergio Paolo Oré Chávez, Daniel Saúl Quiroz Baza, Roger Walter |
author |
Barahona Padilla, Sergio Paolo |
author_facet |
Barahona Padilla, Sergio Paolo Oré Chávez, Daniel Saúl Quiroz Baza, Roger Walter |
author_role |
author |
author2 |
Oré Chávez, Daniel Saúl Quiroz Baza, Roger Walter |
author2_role |
author author |
dc.subject.none.fl_str_mv |
Southeast Pacific Peruvian sea fish genetics gene flow historical demography Pacífico Sudeste mar peruana genética de peces flujo génico demografía histórica. |
topic |
Southeast Pacific Peruvian sea fish genetics gene flow historical demography Pacífico Sudeste mar peruana genética de peces flujo génico demografía histórica. |
description |
The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Current System were examined. Samples were collected between 2103 and 2014 from three fishing points off the Peruvian coast (Paita, Ventanilla and Ilo) and analyzed using mitochondrial D-Loop region sequences. A total of 29 polymorphic sites and 35 haplotypes were found in 72 individuals. Moderate haplotype diversity and very low levels of nucleotide diversity were found. Analysis of gene flow showed high levels of connectivity among sampling areas. Analysis of molecular variance, pairwise comparisons and genetic differentiation tests confirmed the lack of genetic structuring. These analyses suggest that analyzed sampling locations can be considered as a single gene pool. Migratory behavior, the high dispersal potential of early stages and the lack of oceanographic barriers can explain its genetic homogeneity along the Peruvian sea. The historical demography was also examined. Neutrality testing, mismatch distribution and Bayesian skyline plot suggested a population expansion scenario that took place during the Late Pleistocene. This study provides novel information about population genetics of the chub mackerel from the Southeastern Pacific. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-07-21 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807 10.15381/rpb.v24i2.12807 |
url |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807 |
identifier_str_mv |
10.15381/rpb.v24i2.12807 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807/11876 |
dc.rights.none.fl_str_mv |
https://creativecommons.org/licenses/by-nc-sa/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
publisher.none.fl_str_mv |
Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas |
dc.source.none.fl_str_mv |
Revista Peruana de Biología; Vol. 24 Núm. 2 (2017); 163 - 174 Revista Peruana de Biología; Vol. 24 No. 2 (2017); 163 - 174 1727-9933 1561-0837 reponame:Revistas - Universidad Nacional Mayor de San Marcos instname:Universidad Nacional Mayor de San Marcos instacron:UNMSM |
instname_str |
Universidad Nacional Mayor de San Marcos |
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UNMSM |
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UNMSM |
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Revistas - Universidad Nacional Mayor de San Marcos |
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Revistas - Universidad Nacional Mayor de San Marcos |
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1795238311857487872 |
spelling |
High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequencesAlta conectividad genética y expansión poblacional de Scomber japonicus en en la parte norte del Sistema de Corriente de Humboldt reveladas por secuencias de la región control mitocondrialBarahona Padilla, Sergio PaoloOré Chávez, Daniel SaúlQuiroz Baza, Roger WalterSoutheast PacificPeruvian seafish geneticsgene flowhistorical demographyPacífico Sudestemar peruanagenética de pecesflujo génicodemografía histórica.The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Current System were examined. Samples were collected between 2103 and 2014 from three fishing points off the Peruvian coast (Paita, Ventanilla and Ilo) and analyzed using mitochondrial D-Loop region sequences. A total of 29 polymorphic sites and 35 haplotypes were found in 72 individuals. Moderate haplotype diversity and very low levels of nucleotide diversity were found. Analysis of gene flow showed high levels of connectivity among sampling areas. Analysis of molecular variance, pairwise comparisons and genetic differentiation tests confirmed the lack of genetic structuring. These analyses suggest that analyzed sampling locations can be considered as a single gene pool. Migratory behavior, the high dispersal potential of early stages and the lack of oceanographic barriers can explain its genetic homogeneity along the Peruvian sea. The historical demography was also examined. Neutrality testing, mismatch distribution and Bayesian skyline plot suggested a population expansion scenario that took place during the Late Pleistocene. This study provides novel information about population genetics of the chub mackerel from the Southeastern Pacific. La caballa, Scomber japonicus soporta una pesquería importante en el Pacífico Sudeste, sin embargo, su genética de poblaciones se desconoce actualmente. En el presente estudio se examinó la estructura genética, el flujo génico y la demografía histórica de esta especie en la parte norte del Sistema de la Corriente de Humboldt. Las muestras fueron colectadas en los veranos del 2013 y 2014 en tres puntos de desembarco de pesca (Paita, Ventanilla e Ilo) cubriendo 12 grados de latitud frente a la costa peruana. Se secuenció un segmento de 532 pb de la región control mitocondrial en 72 individuos, el cual permitió detectar un total de 29 sitios polimórficos, 35 haplotipos, niveles moderados altos de diversidad haplotípica (0.793 – 0.969) y muy bajos niveles de diversidad nucleotídica (0.004 – 0.008). El análisis de flujo génico mostró altos niveles de conectividad entre las poblaciones en las áreas de muestreo. El análisis de varianza molecular (ФST = 0.00868, P = 0.1837), las comparaciones ФST a pares de poblaciones y las pruebas de diferenciación genética confirmaron la carencia de estructuración genética entre las tres localidades. Estos análisis sugieren que los sitios de muestreo analizados pueden ser considerados como un solo grupo genético. El comportamiento migratorio, el alto potencial de dispersión de los estadios tempranos de desarrollo y la ausencia de barreras oceanográficas pueden explicar su homogeneidad genética a lo largo del mar peruano. También se examinó la demografía histórica. Las pruebas de neutralidad, la distribución mismatch y el Bayesian Skyline Plot sugirieron un escenario de expansión poblacional que tuvo lugar durante el Pleistoceno Superior. Este estudio provee información nueva con respecto a la genética de poblaciones de la caballa en el Pacífico Sudeste.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2017-07-21info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/1280710.15381/rpb.v24i2.12807Revista Peruana de Biología; Vol. 24 Núm. 2 (2017); 163 - 174Revista Peruana de Biología; Vol. 24 No. 2 (2017); 163 - 1741727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMenghttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807/11876Derechos de autor 2017 Sergio Paolo Barahona Padilla, Daniel Saúl Oré Chávez, Roger Walter Quiroz Bazahttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/128072018-06-23T13:32:26Z |
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13.836569 |
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La información contenida en este registro es de entera responsabilidad de la institución que gestiona el repositorio institucional donde esta contenido este documento o set de datos. El CONCYTEC no se hace responsable por los contenidos (publicaciones y/o datos) accesibles a través del Repositorio Nacional Digital de Ciencia, Tecnología e Innovación de Acceso Abierto (ALICIA).