High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences

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The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Curr...

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Detalles Bibliográficos
Autores: Barahona Padilla, Sergio Paolo, Oré Chávez, Daniel Saúl, Quiroz Baza, Roger Walter
Formato: artículo
Fecha de Publicación:2017
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:inglés
OAI Identifier:oai:ojs.csi.unmsm:article/12807
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807
Nivel de acceso:acceso abierto
Materia:Southeast Pacific
Peruvian sea
fish genetics
gene flow
historical demography
Pacífico Sudeste
mar peruana
genética de peces
flujo génico
demografía histórica.
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dc.title.none.fl_str_mv High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
Alta conectividad genética y expansión poblacional de Scomber japonicus en en la parte norte del Sistema de Corriente de Humboldt reveladas por secuencias de la región control mitocondrial
title High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
spellingShingle High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
Barahona Padilla, Sergio Paolo
Southeast Pacific
Peruvian sea
fish genetics
gene flow
historical demography
Pacífico Sudeste
mar peruana
genética de peces
flujo génico
demografía histórica.
title_short High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
title_full High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
title_fullStr High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
title_full_unstemmed High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
title_sort High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequences
dc.creator.none.fl_str_mv Barahona Padilla, Sergio Paolo
Oré Chávez, Daniel Saúl
Quiroz Baza, Roger Walter
author Barahona Padilla, Sergio Paolo
author_facet Barahona Padilla, Sergio Paolo
Oré Chávez, Daniel Saúl
Quiroz Baza, Roger Walter
author_role author
author2 Oré Chávez, Daniel Saúl
Quiroz Baza, Roger Walter
author2_role author
author
dc.subject.none.fl_str_mv Southeast Pacific
Peruvian sea
fish genetics
gene flow
historical demography
Pacífico Sudeste
mar peruana
genética de peces
flujo génico
demografía histórica.
topic Southeast Pacific
Peruvian sea
fish genetics
gene flow
historical demography
Pacífico Sudeste
mar peruana
genética de peces
flujo génico
demografía histórica.
description The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Current System were examined. Samples were collected between 2103 and 2014 from three fishing points off the Peruvian coast (Paita, Ventanilla and Ilo) and analyzed using mitochondrial D-Loop region sequences. A total of 29 polymorphic sites and 35 haplotypes were found in 72 individuals. Moderate haplotype diversity and very low levels of nucleotide diversity were found. Analysis of gene flow showed high levels of connectivity among sampling areas. Analysis of molecular variance, pairwise comparisons and genetic differentiation tests confirmed the lack of genetic structuring. These analyses suggest that analyzed sampling locations can be considered as a single gene pool. Migratory behavior, the high dispersal potential of early stages and the lack of oceanographic barriers can explain its genetic homogeneity along the Peruvian sea. The historical demography was also examined. Neutrality testing, mismatch distribution and Bayesian skyline plot suggested a population expansion scenario that took place during the Late Pleistocene. This study provides novel information about population genetics of the chub mackerel from the Southeastern Pacific. 
publishDate 2017
dc.date.none.fl_str_mv 2017-07-21
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807
10.15381/rpb.v24i2.12807
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807
identifier_str_mv 10.15381/rpb.v24i2.12807
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807/11876
dc.rights.none.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 24 Núm. 2 (2017); 163 - 174
Revista Peruana de Biología; Vol. 24 No. 2 (2017); 163 - 174
1727-9933
1561-0837
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
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institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
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spelling High genetic connectivity and Population Expansion of Scomber japonicus in the Northern Humboldt Current System revealed by mitochondrial D-Loop region sequencesAlta conectividad genética y expansión poblacional de Scomber japonicus en en la parte norte del Sistema de Corriente de Humboldt reveladas por secuencias de la región control mitocondrialBarahona Padilla, Sergio PaoloOré Chávez, Daniel SaúlQuiroz Baza, Roger WalterSoutheast PacificPeruvian seafish geneticsgene flowhistorical demographyPacífico Sudestemar peruanagenética de pecesflujo génicodemografía histórica.The Chub mackerel (Teleostei: Scombridae) supports an important fishery in the Southeastern Pacific, however, its population genetics status is currently unknown. In the present study the population genetic structure, gene flow and historical demography of this resource in the Northern Humboldt Current System were examined. Samples were collected between 2103 and 2014 from three fishing points off the Peruvian coast (Paita, Ventanilla and Ilo) and analyzed using mitochondrial D-Loop region sequences. A total of 29 polymorphic sites and 35 haplotypes were found in 72 individuals. Moderate haplotype diversity and very low levels of nucleotide diversity were found. Analysis of gene flow showed high levels of connectivity among sampling areas. Analysis of molecular variance, pairwise comparisons and genetic differentiation tests confirmed the lack of genetic structuring. These analyses suggest that analyzed sampling locations can be considered as a single gene pool. Migratory behavior, the high dispersal potential of early stages and the lack of oceanographic barriers can explain its genetic homogeneity along the Peruvian sea. The historical demography was also examined. Neutrality testing, mismatch distribution and Bayesian skyline plot suggested a population expansion scenario that took place during the Late Pleistocene. This study provides novel information about population genetics of the chub mackerel from the Southeastern Pacific. La caballa, Scomber japonicus soporta una pesquería importante en el Pacífico Sudeste, sin embargo, su genética de poblaciones se desconoce actualmente. En el presente estudio se examinó la estructura genética, el flujo génico y la demografía histórica de esta especie en la parte norte del Sistema de la Corriente de Humboldt. Las muestras fueron colectadas en los veranos del 2013 y 2014 en tres puntos de desembarco de pesca (Paita, Ventanilla e Ilo) cubriendo 12 grados de latitud frente a la costa peruana. Se secuenció un segmento de 532 pb de la región control mitocondrial en 72 individuos, el cual permitió detectar un total de 29 sitios polimórficos, 35 haplotipos, niveles moderados altos de diversidad haplotípica (0.793 – 0.969) y muy bajos niveles de diversidad nucleotídica (0.004 – 0.008). El análisis de flujo génico mostró altos niveles de conectividad entre las poblaciones en las áreas de muestreo. El análisis de varianza molecular (ФST = 0.00868, P = 0.1837), las comparaciones ФST a pares de poblaciones y las pruebas de diferenciación genética confirmaron la carencia de estructuración genética entre las tres localidades. Estos análisis sugieren que los sitios de muestreo analizados pueden ser considerados como un solo grupo genético. El comportamiento migratorio, el alto potencial de dispersión de los estadios tempranos de desarrollo y la ausencia de barreras oceanográficas pueden explicar su homogeneidad genética a lo largo del mar peruano. También se examinó la demografía histórica. Las pruebas de neutralidad, la distribución mismatch y el Bayesian Skyline Plot sugirieron un escenario de expansión poblacional que tuvo lugar durante el Pleistoceno Superior. Este estudio provee información nueva con respecto a la genética de poblaciones de la caballa en el Pacífico Sudeste.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2017-07-21info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/1280710.15381/rpb.v24i2.12807Revista Peruana de Biología; Vol. 24 Núm. 2 (2017); 163 - 174Revista Peruana de Biología; Vol. 24 No. 2 (2017); 163 - 1741727-99331561-0837reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMenghttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/12807/11876Derechos de autor 2017 Sergio Paolo Barahona Padilla, Daniel Saúl Oré Chávez, Roger Walter Quiroz Bazahttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/128072018-06-23T13:32:26Z
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