Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review

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A systematic review of the diagnostic methods described in the literature for the identification and characterization of species of the genus Salmonella was carried out. The review was carried out using publications from 2015 to 2021 registered in the NCBI/PubMed, ScienceDirect, Scopus, SciELO, Goog...

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Autores: Mondragón G., Valentina, Moreno J., Natalia, Sánchez L., Ligia, Gómez, Arlen P.
Formato: artículo
Fecha de Publicación:2022
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:ojs.csi.unmsm:article/21268
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/21268
Nivel de acceso:acceso abierto
Materia:poultry
diagnosis
enterobacteria
PCR
public health
aves de corral
diagnóstico
enterobacterias
salud pública
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network_name_str Revistas - Universidad Nacional Mayor de San Marcos
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dc.title.none.fl_str_mv Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
Técnicas microbiológicas y moleculares para la identificación de Salmonella sp en la industria avícola: una revisión sistemática de alcance
title Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
spellingShingle Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
Mondragón G., Valentina
poultry
diagnosis
enterobacteria
PCR
public health
aves de corral
diagnóstico
enterobacterias
PCR
salud pública
title_short Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
title_full Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
title_fullStr Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
title_full_unstemmed Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
title_sort Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping review
dc.creator.none.fl_str_mv Mondragón G., Valentina
Moreno J., Natalia
Sánchez L., Ligia
Gómez, Arlen P.
Mondragón G., Valentina
Moreno J., Natalia
Sánchez L., Ligia
Gómez, Arlen P.
author Mondragón G., Valentina
author_facet Mondragón G., Valentina
Moreno J., Natalia
Sánchez L., Ligia
Gómez, Arlen P.
author_role author
author2 Moreno J., Natalia
Sánchez L., Ligia
Gómez, Arlen P.
author2_role author
author
author
dc.subject.none.fl_str_mv poultry
diagnosis
enterobacteria
PCR
public health
aves de corral
diagnóstico
enterobacterias
PCR
salud pública
topic poultry
diagnosis
enterobacteria
PCR
public health
aves de corral
diagnóstico
enterobacterias
PCR
salud pública
description A systematic review of the diagnostic methods described in the literature for the identification and characterization of species of the genus Salmonella was carried out. The review was carried out using publications from 2015 to 2021 registered in the NCBI/PubMed, ScienceDirect, Scopus, SciELO, Google Scholar and Springer databases and applying the PRISMA methodology. In total, 61 articles were analysed, grouping the data according to country of origin, type of sample, technique, microbiology protocol and genes used in molecular tests. The microbiology protocols are based on performing pre-enrichment in peptone water and enrichment in tetrathionate (TT) and Rappaport-Vassiliadis (RV) broths, especially with faecal or environmental samples, to subsequently carry out isolations in selective and differential media. The identification of some Salmonella sp serovars that cause disease in poultry is mainly done with molecular techniques such as conventional PCR and multiplex PCR, based on the detection of genes such as invA, hilA, fliC, sefA, spvC, pefA, speC y glgC. Molecular tools are an alternative to traditional microbiology and serotyping techniques with the White-Kauffmann-Le Minor methodology, as they require less time and can identify serovars; however, microbiological tools such as enrichment contribute to the step prior to the use of other diagnostic tools.
publishDate 2022
dc.date.none.fl_str_mv 2022-12-22
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/21268
10.15381/rivep.v33i6.21268
url https://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/21268
identifier_str_mv 10.15381/rivep.v33i6.21268
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/21268/18940
dc.rights.none.fl_str_mv Derechos de autor 2022 Valentina Mondragón G., Natalia Moreno J., Ligia Sánchez L., Arlen P. Gómez
http://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Derechos de autor 2022 Valentina Mondragón G., Natalia Moreno J., Ligia Sánchez L., Arlen P. Gómez
http://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Medicina Veterinaria
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Medicina Veterinaria
dc.source.none.fl_str_mv Revista de Investigaciones Veterinarias del Perú; Vol. 33 Núm. 6 (2022); e21268
Revista de Investigaciones Veterinarias del Perú; Vol. 33 No. 6 (2022); e21268
1682-3419
1609-9117
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
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instname_str Universidad Nacional Mayor de San Marcos
instacron_str UNMSM
institution UNMSM
reponame_str Revistas - Universidad Nacional Mayor de San Marcos
collection Revistas - Universidad Nacional Mayor de San Marcos
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spelling Microbiological and molecular techniques for the identification of Salmonella sp in the poultry industry: a systematic scoping reviewTécnicas microbiológicas y moleculares para la identificación de Salmonella sp en la industria avícola: una revisión sistemática de alcanceMondragón G., ValentinaMoreno J., NataliaSánchez L., LigiaGómez, Arlen P.Mondragón G., ValentinaMoreno J., NataliaSánchez L., LigiaGómez, Arlen P.poultrydiagnosisenterobacteriaPCRpublic healthaves de corraldiagnósticoenterobacteriasPCRsalud públicaA systematic review of the diagnostic methods described in the literature for the identification and characterization of species of the genus Salmonella was carried out. The review was carried out using publications from 2015 to 2021 registered in the NCBI/PubMed, ScienceDirect, Scopus, SciELO, Google Scholar and Springer databases and applying the PRISMA methodology. In total, 61 articles were analysed, grouping the data according to country of origin, type of sample, technique, microbiology protocol and genes used in molecular tests. The microbiology protocols are based on performing pre-enrichment in peptone water and enrichment in tetrathionate (TT) and Rappaport-Vassiliadis (RV) broths, especially with faecal or environmental samples, to subsequently carry out isolations in selective and differential media. The identification of some Salmonella sp serovars that cause disease in poultry is mainly done with molecular techniques such as conventional PCR and multiplex PCR, based on the detection of genes such as invA, hilA, fliC, sefA, spvC, pefA, speC y glgC. Molecular tools are an alternative to traditional microbiology and serotyping techniques with the White-Kauffmann-Le Minor methodology, as they require less time and can identify serovars; however, microbiological tools such as enrichment contribute to the step prior to the use of other diagnostic tools.Se realizó una revisión sistemática de los métodos de diagnóstico descritos en la literatura para la identificación y caracterización de especies del género Salmonella. La revisión se realizó utilizando publicaciones de 2015 a 2021 registradas en las bases de datos de NCBI/PubMed, ScienceDirect, Scopus, SciELO, Google Scholar y Springer, aplicando la metodología PRISMA. Se analizaron 61 artículos, agrupando los datos según el país de origen, tipo de muestra, técnica utilizada, protocolo de microbiología empleado y genes utilizados en las pruebas moleculares. Los protocolos de microbiología se basan en pruebas de pre-enriquecimiento en agua peptonada y enriquecimiento en caldos de tetrationato (TT) y Rappaport-Vassiliadis (RV), especialmente con muestras de heces o muestras ambientales, para posteriormente realizar los aislamientos en medios selectivos y diferenciales. La identificación de algunas serovariedades de Salmonella sp que causan enfermedad en las aves se realiza principalmente con técnicas moleculares (PCR convencional y PCR multiplex), basándose en la detección de genes como invA, hilA, fliC, sefA, spvC, pefA, speC y glgC. Las herramientas moleculares son una alternativa a las técnicas tradicionales de microbiología y serotipificación con la metodología White-Kauffmann–Le Minor, por requerir de menos tiempo y poder identificar a los serovares; sin embargo, las herramientas microbiológicas como el enriquecimiento contribuyen en el paso previo al empleo de otras herramientas diagnósticas.Universidad Nacional Mayor de San Marcos, Facultad de Medicina Veterinaria2022-12-22info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/2126810.15381/rivep.v33i6.21268Revista de Investigaciones Veterinarias del Perú; Vol. 33 Núm. 6 (2022); e21268Revista de Investigaciones Veterinarias del Perú; Vol. 33 No. 6 (2022); e212681682-34191609-9117reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/veterinaria/article/view/21268/18940Derechos de autor 2022 Valentina Mondragón G., Natalia Moreno J., Ligia Sánchez L., Arlen P. Gómezhttp://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessoai:ojs.csi.unmsm:article/212682022-12-22T14:06:45Z
score 13.894945
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