Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica

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Peruvian Muskovy duck (Cairina moschata domestica) is one of the most economically important species in human nutrition. Duck species form complex genetic groups which are difficult to recognize, thus the use microsatellite markers (SSRs) identified already in Anas platyrhynchos (related species), r...

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Detalles Bibliográficos
Autores: Acuña Rodriguez, Wendy, Yalta Macedo, Claudia Esther, Veli Rivera, Eudosio Amancio
Formato: artículo
Fecha de Publicación:2020
Institución:Universidad Nacional Mayor de San Marcos
Repositorio:Revistas - Universidad Nacional Mayor de San Marcos
Lenguaje:español
OAI Identifier:oai:revistasinvestigacion.unmsm.edu.pe:article/15015
Enlace del recurso:https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/15015
Nivel de acceso:acceso abierto
Materia:Cairina mochata domestica
Marker Transferability
PIC
M13 tail
capillary electrophoresis
SSR
transferibilidad
cola M13
electroforesis capilar
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network_name_str Revistas - Universidad Nacional Mayor de San Marcos
repository_id_str
dc.title.none.fl_str_mv Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
Transferibilidad de marcadores microsatélites de Anas platyrhynchos al pato criollo peruano Cairina moschata domestica
title Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
spellingShingle Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
Acuña Rodriguez, Wendy
Cairina mochata domestica
Marker Transferability
PIC
M13 tail
capillary electrophoresis
SSR
Cairina mochata domestica
transferibilidad
PIC
cola M13
electroforesis capilar
SSR
title_short Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
title_full Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
title_fullStr Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
title_full_unstemmed Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
title_sort Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domestica
dc.creator.none.fl_str_mv Acuña Rodriguez, Wendy
Yalta Macedo, Claudia Esther
Veli Rivera, Eudosio Amancio
author Acuña Rodriguez, Wendy
author_facet Acuña Rodriguez, Wendy
Yalta Macedo, Claudia Esther
Veli Rivera, Eudosio Amancio
author_role author
author2 Yalta Macedo, Claudia Esther
Veli Rivera, Eudosio Amancio
author2_role author
author
dc.subject.none.fl_str_mv Cairina mochata domestica
Marker Transferability
PIC
M13 tail
capillary electrophoresis
SSR
Cairina mochata domestica
transferibilidad
PIC
cola M13
electroforesis capilar
SSR
topic Cairina mochata domestica
Marker Transferability
PIC
M13 tail
capillary electrophoresis
SSR
Cairina mochata domestica
transferibilidad
PIC
cola M13
electroforesis capilar
SSR
description Peruvian Muskovy duck (Cairina moschata domestica) is one of the most economically important species in human nutrition. Duck species form complex genetic groups which are difficult to recognize, thus the use microsatellite markers (SSRs) identified already in Anas platyrhynchos (related species), represents a very attractive option for its cheapness and usefulness for solving issues related to conservation of genomic diversity, gene flow and hybridization between population. The main goal of this work was to evaluate the degree of polymorphism (PIC) and the transferability of 24 SSRs identified for A. platyrhynchos to C. moschata domestica. In this study, DNA collected from wing feathers was extracted using the chloroform-isoamyl alcohol method. SSRs were constructed with an additional 19 bp sequence (M13 tail) and 6-FAM, VIC, NED and PET fluorophores were used for their labeling. The amplified fragments were visualized on 2% agarose gels and separated by capillary electrophoresis in an automatic ABI 3130XL sequencer. Results showed 7 SSR with high PIC value (PIC> 0.5) and the CMO211 marker expressed in a smaller molecular size that the one used as reference. In conclusion, we showed that 75% of the SSR designed for A. platyrhynchos were transferable to C. moschata domestica as well as we found only 7 SSR highly informative, thus we proved that SSR are highly useful for detecting polymorphisms in related species and improved the Peruvian populations of Muskovy ducks.
publishDate 2020
dc.date.none.fl_str_mv 2020-05-24
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/15015
10.15381/rpb.v27i2.15015
url https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/15015
identifier_str_mv 10.15381/rpb.v27i2.15015
dc.language.none.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/15015/14293
dc.rights.none.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
publisher.none.fl_str_mv Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas
dc.source.none.fl_str_mv Revista Peruana de Biología; Vol. 27 No. 2 (2020); 255-260
Revista Peruana de Biología; Vol. 27 Núm. 2 (2020); 255-260
1727-9933
1561-0837
10.15381/rpb.v27i2
reponame:Revistas - Universidad Nacional Mayor de San Marcos
instname:Universidad Nacional Mayor de San Marcos
instacron:UNMSM
instname_str Universidad Nacional Mayor de San Marcos
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reponame_str Revistas - Universidad Nacional Mayor de San Marcos
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repository.name.fl_str_mv
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spelling Cross species transferability of microsatellite markers from Anas platyrhynchos to Peruvian Muscovy Duck Cairina moschata domesticaTransferibilidad de marcadores microsatélites de Anas platyrhynchos al pato criollo peruano Cairina moschata domesticaAcuña Rodriguez, WendyYalta Macedo, Claudia EstherVeli Rivera, Eudosio AmancioCairina mochata domesticaMarker TransferabilityPICM13 tailcapillary electrophoresisSSRCairina mochata domesticatransferibilidadPICcola M13electroforesis capilarSSRPeruvian Muskovy duck (Cairina moschata domestica) is one of the most economically important species in human nutrition. Duck species form complex genetic groups which are difficult to recognize, thus the use microsatellite markers (SSRs) identified already in Anas platyrhynchos (related species), represents a very attractive option for its cheapness and usefulness for solving issues related to conservation of genomic diversity, gene flow and hybridization between population. The main goal of this work was to evaluate the degree of polymorphism (PIC) and the transferability of 24 SSRs identified for A. platyrhynchos to C. moschata domestica. In this study, DNA collected from wing feathers was extracted using the chloroform-isoamyl alcohol method. SSRs were constructed with an additional 19 bp sequence (M13 tail) and 6-FAM, VIC, NED and PET fluorophores were used for their labeling. The amplified fragments were visualized on 2% agarose gels and separated by capillary electrophoresis in an automatic ABI 3130XL sequencer. Results showed 7 SSR with high PIC value (PIC> 0.5) and the CMO211 marker expressed in a smaller molecular size that the one used as reference. In conclusion, we showed that 75% of the SSR designed for A. platyrhynchos were transferable to C. moschata domestica as well as we found only 7 SSR highly informative, thus we proved that SSR are highly useful for detecting polymorphisms in related species and improved the Peruvian populations of Muskovy ducks.El pato criollo peruano (Cairina moschata domestica) es una de las especies de mayor importancia económica en la alimentación humana. Las especies de patos forman grupos genéticos complejos y difíciles de reconocer, por lo que el uso marcadores microsatélites (SSR) identificados en una especie relacionada como Anas platyrhynchos, representa una opción atractiva, de menor costo y útil para resolver temas relacionados con la conservación de la diversidad genómica, flujo génico e hibridación entre poblaciones. El objetivo de la investigación fue evaluar la transferibilidad de 24 SSR identificados para A. platyrhynchos a las poblaciones peruanas de C. moschata doméstica y determinar el grado de polimorfismo (PIC) de los marcadores transferibles. Para ello, se obtuvo ADN a partir de plumas alares usando el método cloroformo-alcohol isoamílico. Los SSR se construyeron con una secuencia adicional de 19 pb (cola M13) y se utilizaron fluoróforos 6-FAM, VIC, NED y PET para su etiquetado. Los fragmentos amplificados fueron visualizados en geles de agarosa 2% y separados por electroforesis capilar en un secuenciador automático ABI 3130XL. Los resultados mostraron 7 SSRs con un valor PIC alto (PIC>0.5) y que el marcador CMO211 se expresaba con un tamaño molecular menor del de la referencia. En conclusión, el presente trabajo demostró que el 75% de los SSR diseñados para A. platyrhynchos son transferibles a C. moschata domestica; y que sólo 7 fueron altamente informativos. Demostrando así que los SSRs son útiles en la detección de polimorfismos en especies relacionadas y pueden ser usados para mejorar las poblaciones peruanas de patos criollos.Universidad Nacional Mayor de San Marcos, Facultad de Ciencias Biológicas2020-05-24info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/1501510.15381/rpb.v27i2.15015Revista Peruana de Biología; Vol. 27 No. 2 (2020); 255-260Revista Peruana de Biología; Vol. 27 Núm. 2 (2020); 255-2601727-99331561-083710.15381/rpb.v27i2reponame:Revistas - Universidad Nacional Mayor de San Marcosinstname:Universidad Nacional Mayor de San Marcosinstacron:UNMSMspahttps://revistasinvestigacion.unmsm.edu.pe/index.php/rpb/article/view/15015/14293Derechos de autor 2019 Wendy Acuña Rodriguez, Claudia Esther Yalta Macedo, Eudosio Amancio Veli Riverahttps://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessoai:revistasinvestigacion.unmsm.edu.pe:article/150152020-05-25T18:06:31Z
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