Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan

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Lily (genus Lilium) is one of the most important flowers for bulb and cut flower production in the world. Lilium rubellum Baker is a native species of Japan that exhibits early flowering, is pink coloured, and possesses a pleasant fragrance, which makes it an important genetic resource for breeding...

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Detalles Bibliográficos
Autores: Castro, M., Nishikawa, T.
Formato: artículo
Fecha de Publicación:2019
Institución:Universidad Nacional Agraria La Molina
Repositorio:Revistas - Universidad Nacional Agraria La Molina
Lenguaje:inglés
OAI Identifier:oai:revistas.lamolina.edu.pe:article/1251
Enlace del recurso:https://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/1251
Nivel de acceso:acceso abierto
Materia:genetic diversity
RAPD marker
Lilium rubellum
Diversidad genética
marcador RAPD
id REVUNALM_95cbda8dc57bc3dde77bb8e4484c53ba
oai_identifier_str oai:revistas.lamolina.edu.pe:article/1251
network_acronym_str REVUNALM
network_name_str Revistas - Universidad Nacional Agraria La Molina
repository_id_str
dc.title.none.fl_str_mv Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
Variación Genética del Lirio Rosa (Lilium rubellum Baker) dentro y entre tres poblaciones naturales de la Prefectura de Fukushima en Japón
title Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
spellingShingle Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
Castro, M.
genetic diversity
RAPD marker
Lilium rubellum
Diversidad genética
marcador RAPD
Lilium rubellum
title_short Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
title_full Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
title_fullStr Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
title_full_unstemmed Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
title_sort Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in Japan
dc.creator.none.fl_str_mv Castro, M.
Nishikawa, T.
author Castro, M.
author_facet Castro, M.
Nishikawa, T.
author_role author
author2 Nishikawa, T.
author2_role author
dc.subject.none.fl_str_mv genetic diversity
RAPD marker
Lilium rubellum
Diversidad genética
marcador RAPD
Lilium rubellum
topic genetic diversity
RAPD marker
Lilium rubellum
Diversidad genética
marcador RAPD
Lilium rubellum
description Lily (genus Lilium) is one of the most important flowers for bulb and cut flower production in the world. Lilium rubellum Baker is a native species of Japan that exhibits early flowering, is pink coloured, and possesses a pleasant fragrance, which makes it an important genetic resource for breeding lilies. In this work, the genetic diversity of L. rubellum was studied among three natural populations located in Fukushima Prefecture, Japan, which have been designated as the Mt. Azuma, Nango and Atsushio-kano populations. A total of 31 accessions collected in 1997 were analysed using Random Amplified Polymorphic DNA (RAPD) markers. Eighteen decamer primers produced 98% polymorphic RAPD bands; furthermore, 11 of the 18 primers produced 10 or more polymorphic bands with a mean per primer Polymorphic Information Content of 0.382. Among the three populations, the mean Shannon index, Nei´s gene diversity and percentage of polymorphic loci were 0.2749, 0.4099 and 76.7%, respectively. These data revealed that there is a high genetic diversity within all the populations. Analysis of the three genetic diversity indices within populations showed that the Nango population had the highest genetic diversity, whereas the Atsushio-kano population had the lowest. An unweighted pair group method with arithmetic mean dendrogram based on Jaccard´s similarity coefficient was constructed, and the three populations of L. rubellum collected in the Fukushima prefecture were clearly differentiated at 0.61 similarity index. The Nango and Mt. Azuma populations were genetically closer than the Atsushio-kano population. The analysis of molecular variance showed a 29.53% variance among the populations. This study revealed that there is high genetic diversity within populations and moderate genetic diversity among the three natural populations of L. rubellum Baker in the Fukushima Prefecture of Japan.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-30
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/1251
10.21704/pja.v3i3.1251
url https://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/1251
identifier_str_mv 10.21704/pja.v3i3.1251
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/1251/2759
dc.rights.none.fl_str_mv Derechos de autor 2019 M. Castro, T. Nishikawa.
https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Derechos de autor 2019 M. Castro, T. Nishikawa.
https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad Nacional Agraria La Molina
publisher.none.fl_str_mv Universidad Nacional Agraria La Molina
dc.source.none.fl_str_mv Peruvian Journal of Agronomy; Vol. 3 No. 3 (2019): September to December; 112-119
Peruvian Journal of Agronomy; Vol. 3 Núm. 3 (2019): September to December; 112-119
2616-4477
reponame:Revistas - Universidad Nacional Agraria La Molina
instname:Universidad Nacional Agraria La Molina
instacron:UNALM
instname_str Universidad Nacional Agraria La Molina
instacron_str UNALM
institution UNALM
reponame_str Revistas - Universidad Nacional Agraria La Molina
collection Revistas - Universidad Nacional Agraria La Molina
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Genetic variation of maiden lily (Lilium rubellum Baker) within and among three natural populations in Fukushima Prefecture in JapanVariación Genética del Lirio Rosa (Lilium rubellum Baker) dentro y entre tres poblaciones naturales de la Prefectura de Fukushima en JapónCastro, M.Nishikawa, T.genetic diversityRAPD markerLilium rubellumDiversidad genéticamarcador RAPDLilium rubellumLily (genus Lilium) is one of the most important flowers for bulb and cut flower production in the world. Lilium rubellum Baker is a native species of Japan that exhibits early flowering, is pink coloured, and possesses a pleasant fragrance, which makes it an important genetic resource for breeding lilies. In this work, the genetic diversity of L. rubellum was studied among three natural populations located in Fukushima Prefecture, Japan, which have been designated as the Mt. Azuma, Nango and Atsushio-kano populations. A total of 31 accessions collected in 1997 were analysed using Random Amplified Polymorphic DNA (RAPD) markers. Eighteen decamer primers produced 98% polymorphic RAPD bands; furthermore, 11 of the 18 primers produced 10 or more polymorphic bands with a mean per primer Polymorphic Information Content of 0.382. Among the three populations, the mean Shannon index, Nei´s gene diversity and percentage of polymorphic loci were 0.2749, 0.4099 and 76.7%, respectively. These data revealed that there is a high genetic diversity within all the populations. Analysis of the three genetic diversity indices within populations showed that the Nango population had the highest genetic diversity, whereas the Atsushio-kano population had the lowest. An unweighted pair group method with arithmetic mean dendrogram based on Jaccard´s similarity coefficient was constructed, and the three populations of L. rubellum collected in the Fukushima prefecture were clearly differentiated at 0.61 similarity index. The Nango and Mt. Azuma populations were genetically closer than the Atsushio-kano population. The analysis of molecular variance showed a 29.53% variance among the populations. This study revealed that there is high genetic diversity within populations and moderate genetic diversity among the three natural populations of L. rubellum Baker in the Fukushima Prefecture of Japan.El Lirio (género Lilium) es una de las flores bulbosas de corte más importantes en el mundo. Lilium rubellum Baker es una especie nativa de Japón, produce una floración muy temprana de color rosado, y una agradable fragancia, por lo que esta especie es un importante recurso genético para el mejoramiento genético de los lirios. En este trabajo se estudió la diversidad genética de L. rubellum entre tres poblaciones naturales de la prefectura de Fukushima en Japón: Mt. Azuma, Nango y Atsushio-Kano. Se analizaron un total de 31 accesiones mediante la prueba de ADN polimórfico amplificado aleatorio (RAPD). 18 decámeros cebadores produjeron 98% de bandas polimórficas, 11 de estos 18 cebadores producen 10 o más bandas polimórficas con una media por cebador de Contenido de Información Polimórfica (PIC) = 0.382. La media del índice de Sahnnon Ho = 0.2749, de la diversidad genética de Nei He = 0.4099 y el porcentaje de loci Polimórficos = 76.7 revelaron que existe una alta diversidad genética dentro de todas estas poblaciones. Los análisis de los tres índices de diversidad genética intrapoblacional, mostraron que la población de Nango tenía la mayor diversidad genética y la población de Atsushio-kano la más baja. Se construyó un dendrograma UPGMA basado en el coeficiente de similitud de Jaccard y con un índice de similitud de 0.61, las tres poblaciones de L. rubellum recolectadas en la prefectura de Fukushima fueron claramente diferenciadas. Las poblaciones de Nango y de Monte Azuma estaban más cercanamente relacionadas genéticamente que con la población de Atsushio-kano. Con el análisis de la varianza molecular (AMOVA) se observó que existe un 29,53% variación interpoblacional. Este estudio reveló que existe una alta diversidad genética dentro de las poblaciones y una moderada diversidad genética entre las tres poblaciones naturales de L. rubellum Baker en la prefectura de Fukushima en Japón.Universidad Nacional Agraria La Molina2019-12-30info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/125110.21704/pja.v3i3.1251Peruvian Journal of Agronomy; Vol. 3 No. 3 (2019): September to December; 112-119Peruvian Journal of Agronomy; Vol. 3 Núm. 3 (2019): September to December; 112-1192616-4477reponame:Revistas - Universidad Nacional Agraria La Molinainstname:Universidad Nacional Agraria La Molinainstacron:UNALMenghttps://revistas.lamolina.edu.pe/index.php/jpagronomy/article/view/1251/2759Derechos de autor 2019 M. Castro, T. Nishikawa.https://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessoai:revistas.lamolina.edu.pe:article/12512025-05-12T18:17:46Z
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