Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru

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Coffee (Coffea arabica L.) plays a major role in the economy of Peru and the world. The present study aims to elucidate the agro-morphological variability of coffee genotypes maintained in the INIA´s germplasm collection. Therefore, 20 vegetative, reproductive, and phytosanitary traits of 162 coffee...

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Detalles Bibliográficos
Autores: Paredes Espinosa, Richard, Gutiérrez Reynoso, Dina Lida, Atoche Garay, Diego Fernando, Mansilla Córdova, Pedro Javier , Abad Romaní, Yudi Gertrudis, Girón Aguilar, Rita Carolina, Flores Torres, Itala, Montañez Artica, Ana Gabriela, Arbizu Berrocal, Carlos Irvin, Amasifuen Guerra, Carlos Alberto, Maicelo Quintana, Jorge Luis, Poemape Tuesta, Carlos Augusto, Guerrero Abad, Juan Carlos
Formato: artículo
Fecha de Publicación:2023
Institución:Instituto Nacional de Innovación Agraria
Repositorio:INIA-Institucional
Lenguaje:inglés
OAI Identifier:oai:null:20.500.12955/2289
Enlace del recurso:https://hdl.handle.net/20.500.12955/2289
https://doi.org/10.1002/csc2.20971
Nivel de acceso:acceso abierto
Materia:INIA-CGC, INIA´s coffee germplasm collection
ANOVA, analysis of variance
GCV, genotypic coefficient of variation
PCV, phenotypic coefficient of variation
https://purl.org/pe-repo/ocde/ford#4.01.06
Phenotypic variation
Variación fenotípica
Genotypes
Genotipos
Coffee
Café
Coffea arabica
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dc.title.es_PE.fl_str_mv Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
title Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
spellingShingle Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
Paredes Espinosa, Richard
INIA-CGC, INIA´s coffee germplasm collection
ANOVA, analysis of variance
GCV, genotypic coefficient of variation
PCV, phenotypic coefficient of variation
https://purl.org/pe-repo/ocde/ford#4.01.06
Phenotypic variation
Variación fenotípica
Genotypes
Genotipos
Coffee
Café
Coffea arabica
title_short Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
title_full Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
title_fullStr Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
title_full_unstemmed Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
title_sort Agro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru
author Paredes Espinosa, Richard
author_facet Paredes Espinosa, Richard
Gutiérrez Reynoso, Dina Lida
Atoche Garay, Diego Fernando
Mansilla Córdova, Pedro Javier 
Abad Romaní, Yudi Gertrudis
Girón Aguilar, Rita Carolina
Flores Torres, Itala
Montañez Artica, Ana Gabriela
Arbizu Berrocal, Carlos Irvin
Amasifuen Guerra, Carlos Alberto
Maicelo Quintana, Jorge Luis
Poemape Tuesta, Carlos Augusto
Guerrero Abad, Juan Carlos
author_role author
author2 Gutiérrez Reynoso, Dina Lida
Atoche Garay, Diego Fernando
Mansilla Córdova, Pedro Javier 
Abad Romaní, Yudi Gertrudis
Girón Aguilar, Rita Carolina
Flores Torres, Itala
Montañez Artica, Ana Gabriela
Arbizu Berrocal, Carlos Irvin
Amasifuen Guerra, Carlos Alberto
Maicelo Quintana, Jorge Luis
Poemape Tuesta, Carlos Augusto
Guerrero Abad, Juan Carlos
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Paredes Espinosa, Richard
Gutiérrez Reynoso, Dina Lida
Atoche Garay, Diego Fernando
Mansilla Córdova, Pedro Javier 
Abad Romaní, Yudi Gertrudis
Girón Aguilar, Rita Carolina
Flores Torres, Itala
Montañez Artica, Ana Gabriela
Arbizu Berrocal, Carlos Irvin
Amasifuen Guerra, Carlos Alberto
Maicelo Quintana, Jorge Luis
Poemape Tuesta, Carlos Augusto
Guerrero Abad, Juan Carlos
dc.subject.es_PE.fl_str_mv INIA-CGC, INIA´s coffee germplasm collection
ANOVA, analysis of variance
GCV, genotypic coefficient of variation
PCV, phenotypic coefficient of variation
topic INIA-CGC, INIA´s coffee germplasm collection
ANOVA, analysis of variance
GCV, genotypic coefficient of variation
PCV, phenotypic coefficient of variation
https://purl.org/pe-repo/ocde/ford#4.01.06
Phenotypic variation
Variación fenotípica
Genotypes
Genotipos
Coffee
Café
Coffea arabica
dc.subject.ocde.es_PE.fl_str_mv https://purl.org/pe-repo/ocde/ford#4.01.06
dc.subject.agrovoc.es_PE.fl_str_mv Phenotypic variation
Variación fenotípica
Genotypes
Genotipos
Coffee
Café
Coffea arabica
description Coffee (Coffea arabica L.) plays a major role in the economy of Peru and the world. The present study aims to elucidate the agro-morphological variability of coffee genotypes maintained in the INIA´s germplasm collection. Therefore, 20 vegetative, reproductive, and phytosanitary traits of 162 coffee accessions of INIA’s germplasm collection were evaluated and analyzed. Correlation results indicate that a simultaneous selection of characters, such as number of branches per plant, number of nodes per branch, leaf area and weight of a hundred fruits, can contribute to increase coffee yields. Additionally, coffee yield was negatively correlated with the incidence and severity of coffee leaf rust, and interestingly the occurrence of small and compact coffee plants with high resistance to the disease was also found. The analysis of Tocher and Mahalanobis D2 determined the formation of 10 groups of divergent coffee accessions; where clusters 1 (accession codes 20, 29, 38, 54, 67, 71, 117, 24, 26 and 27), 5 (accession codes 46 and 53), 9 (accession code 159), and 10 (accession code 203) group promising accessions that can be used in breeding programs. Principal component analysis (PCA) showed that at least five of its principal components managed to explain 70.01% of the total variation in the collection. Finally, the high coefficients obtained for the phenotypic, genotypic and heritability variation confirm the existence of additive genes in the evaluated population, that would ensure the success of coffee breeding programs based on the selection of traits of agronomic importance.
publishDate 2023
dc.date.accessioned.none.fl_str_mv 2023-08-31T17:37:12Z
dc.date.available.none.fl_str_mv 2023-08-31T17:37:12Z
dc.date.issued.fl_str_mv 2023-06-06
dc.type.es_PE.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.es_PE.fl_str_mv Paredes‐Espinosa, R., Gutiérrez‐Reynoso, D. L., Atoche‐Garay, D., Mansilla‐Córdova, P. J., Abad‐Romaní, Y., Girón‐Aguilar, C., ... & Guerrero‐Abad, J. C. Agro‐morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru. Crop Science. doi: 10.1002/csc2.20971
dc.identifier.issn.none.fl_str_mv 0011-183X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12955/2289
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1002/csc2.20971
identifier_str_mv Paredes‐Espinosa, R., Gutiérrez‐Reynoso, D. L., Atoche‐Garay, D., Mansilla‐Córdova, P. J., Abad‐Romaní, Y., Girón‐Aguilar, C., ... & Guerrero‐Abad, J. C. Agro‐morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru. Crop Science. doi: 10.1002/csc2.20971
0011-183X
url https://hdl.handle.net/20.500.12955/2289
https://doi.org/10.1002/csc2.20971
dc.language.iso.es_PE.fl_str_mv eng
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dc.relation.ispartofseries.es_PE.fl_str_mv Crop science
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dc.publisher.es_PE.fl_str_mv John Wiley & Sons Inc.
dc.publisher.country.es_PE.fl_str_mv PE
dc.source.es_PE.fl_str_mv Instituto Nacional de Innovación Agraria
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spelling Paredes Espinosa, RichardGutiérrez Reynoso, Dina LidaAtoche Garay, Diego FernandoMansilla Córdova, Pedro Javier Abad Romaní, Yudi GertrudisGirón Aguilar, Rita CarolinaFlores Torres, ItalaMontañez Artica, Ana GabrielaArbizu Berrocal, Carlos IrvinAmasifuen Guerra, Carlos AlbertoMaicelo Quintana, Jorge LuisPoemape Tuesta, Carlos AugustoGuerrero Abad, Juan Carlos2023-08-31T17:37:12Z2023-08-31T17:37:12Z2023-06-06Paredes‐Espinosa, R., Gutiérrez‐Reynoso, D. L., Atoche‐Garay, D., Mansilla‐Córdova, P. J., Abad‐Romaní, Y., Girón‐Aguilar, C., ... & Guerrero‐Abad, J. C. Agro‐morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peru. Crop Science. doi: 10.1002/csc2.209710011-183Xhttps://hdl.handle.net/20.500.12955/2289https://doi.org/10.1002/csc2.20971Coffee (Coffea arabica L.) plays a major role in the economy of Peru and the world. The present study aims to elucidate the agro-morphological variability of coffee genotypes maintained in the INIA´s germplasm collection. Therefore, 20 vegetative, reproductive, and phytosanitary traits of 162 coffee accessions of INIA’s germplasm collection were evaluated and analyzed. Correlation results indicate that a simultaneous selection of characters, such as number of branches per plant, number of nodes per branch, leaf area and weight of a hundred fruits, can contribute to increase coffee yields. Additionally, coffee yield was negatively correlated with the incidence and severity of coffee leaf rust, and interestingly the occurrence of small and compact coffee plants with high resistance to the disease was also found. The analysis of Tocher and Mahalanobis D2 determined the formation of 10 groups of divergent coffee accessions; where clusters 1 (accession codes 20, 29, 38, 54, 67, 71, 117, 24, 26 and 27), 5 (accession codes 46 and 53), 9 (accession code 159), and 10 (accession code 203) group promising accessions that can be used in breeding programs. Principal component analysis (PCA) showed that at least five of its principal components managed to explain 70.01% of the total variation in the collection. Finally, the high coefficients obtained for the phenotypic, genotypic and heritability variation confirm the existence of additive genes in the evaluated population, that would ensure the success of coffee breeding programs based on the selection of traits of agronomic importance.application/pdfengJohn Wiley & Sons Inc.PEurn:issn:0011-183XCrop scienceinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/4.0/Instituto Nacional de Innovación AgrariaRepositorio Institucional - INIAreponame:INIA-Institucionalinstname:Instituto Nacional de Innovación Agrariainstacron:INIAINIA-CGC, INIA´s coffee germplasm collectionANOVA, analysis of varianceGCV, genotypic coefficient of variationPCV, phenotypic coefficient of variationhttps://purl.org/pe-repo/ocde/ford#4.01.06Phenotypic variationVariación fenotípicaGenotypesGenotiposCoffeeCaféCoffea arabicaAgro-morphological characterization and diversity analysis of Coffea arabica germplasm collection from INIA, Peruinfo:eu-repo/semantics/articleORIGINALParedes_et-al_coffee_diversity.pdfParedes_et-al_coffee_diversity.pdfArticle (English)application/pdf1515090https://repositorio.inia.gob.pe/bitstreams/01f7dd84-3287-4dd6-b510-19794182575c/downloadf02cf08a2773f00106429e46363965e4MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.inia.gob.pe/bitstreams/9c3372d4-fa34-4afa-ad5c-9652d840ce57/download8a4605be74aa9ea9d79846c1fba20a33MD52TEXTParedes_et-al_coffee_diversity.pdf.txtParedes_et-al_coffee_diversity.pdf.txtExtracted texttext/plain85099https://repositorio.inia.gob.pe/bitstreams/6074fb98-ad32-421c-9624-ab722fa42988/download5b6d1f01db5e0d5e6bc3087bfe990936MD53THUMBNAILParedes_et-al_coffee_diversity.pdf.jpgParedes_et-al_coffee_diversity.pdf.jpgGenerated Thumbnailimage/jpeg1802https://repositorio.inia.gob.pe/bitstreams/611b2951-0a8e-4bac-b73b-f3984dd6567c/downloadce79efc39b7d5c695b2f2e68b5d47e45MD5420.500.12955/2289oai:repositorio.inia.gob.pe:20.500.12955/22892023-08-31 12:37:13.675https://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessopen.accesshttps://repositorio.inia.gob.peRepositorio Institucional INIArepositorio@inia.gob.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